Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0210.Seq
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    30   2.2  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    30   2.2  
Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    29   3.9  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 141 LGSYLEGRSFFDAVXGAKSSVRPVTAGVPQGSVLAP 248
           +  +L  RSF   +    SS +  T GVPQG+VL+P
Sbjct: 50  VNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSP 85


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 427 GPMEGRGQRGEDCGYPLRSGPHNS-RPGKLSLRG 525
           GP    G+RGEDCGY     P N+  PG   + G
Sbjct: 525 GPPGNNGERGEDCGYCPDGVPGNAGDPGFPGMNG 558


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 427 GPMEGRGQRGEDCGYPLRSGPHNS-RPGKLSLRG 525
           GP    G+RGEDCGY     P N+  PG   + G
Sbjct: 524 GPPGNNGERGEDCGYCPDGVPGNAGDPGFPGMNG 557


>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical
           protein C25A1.7 protein.
          Length = 970

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 305 WEVDVKLALFADDSAYFSSSNVPSAAILRMQRLLDLLPQWLD 430
           WE+DVK  L  ++     S  +PS  + ++++  D++  WLD
Sbjct: 554 WEIDVKEIL--ENEEVRRSLEIPSDIVSQLKKNTDIMDVWLD 593


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 972

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 305 WEVDVKLALFADDSAYFSSSNVPSAAILRMQRLLDLLPQWLD 430
           WE+DVK  L  ++     S  +PS  + ++++  D++  WLD
Sbjct: 554 WEIDVKEIL--ENEEVRRSLEIPSDIVSQLKKNTDIMDVWLD 593


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,826,134
Number of Sequences: 27780
Number of extensions: 346244
Number of successful extensions: 960
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)