Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0209.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    41   2e-04
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    29   0.58 
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    27   3.1  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   9.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   9.5  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
 Frame = +2

Query: 338  EYTSLNALKLFVSMAIEMLNLWRVLCE---HQFHVIAASLPADQQNALQAASFRELLVGR 508
            E+ +L+AL L +   +E ++    L +     FH I +S   D Q +    +F E    +
Sbjct: 715  EHRALSALLLVLQQIVEGISFLLFLNDTGVSDFHEIVSSTSIDIQKSCSNMTFGEFFTSK 774

Query: 509  Q--EVACLLLGSLVAGYLRDNASVDGISQKLRQLCPTLYRQXDATCXQGQRTL 661
            +  EV   L+ SLV  +L+   ++D +SQ LR+ C +     D    +   +L
Sbjct: 775  RGREVTKELVNSLVNRHLQSGGNIDMVSQLLRKKCGSFCSADDVLIFKAVESL 827


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 656 TLDCLP-KQQKNPTXRGRNVCSMPLKTVXKIVGPQMVNLXHW 778
           T++C+P +QQ+N    G +VC+  L+ V +++   M     W
Sbjct: 152 TIECMPVQQQRNGYDCGAHVCAFTLELVRRLLHSPMPTSSMW 193


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 82  FPLNDVWLYGVGLIE 38
           FPLND+WL G+ +++
Sbjct: 269 FPLNDIWLSGLRIVD 283


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = +3

Query: 57  YNQTSFNGNITQQQRDPNYPVPIEFSAKHNGLYIYVGRILLPIWNLKCVSKSQTPDSKEF 236
           Y + SF+  ++  ++DPNY      +  +  L +Y   I   +   KC  K+   D+ + 
Sbjct: 556 YLEDSFSAFVSSLRKDPNY------APAYTSLGLYYRDIHDMVRATKCFQKAFELDASQV 609

Query: 237 MSSQVTART 263
            +++  A+T
Sbjct: 610 EAAEALAKT 618


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 375 ETNNFNAFSDVYSSECCGANVRCMNAATRCNFLAMYAQSSL 253
           ETN  + F D Y+ E CG       ++   NF A ++ +S+
Sbjct: 354 ETNQNSYFDDSYNQESCGFPGLNSLSSYEGNFEASFSNASM 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,450
Number of Sequences: 5004
Number of extensions: 64551
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)