Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0209.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21)               82   4e-16
SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)                    29   5.8  

>SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21)
          Length = 928

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 40/130 (30%), Positives = 69/130 (53%)
 Frame = +2

Query: 287 QRVAAFMQRTLAPQHSEEYTSLNALKLFVSMAIEMLNLWRVLCEHQFHVIAASLPADQQN 466
           Q+V     +     +  E  +L +LK  V  + E++ LW+++CE  F      +   Q++
Sbjct: 222 QQVLQRSHQATTEAYLAERRALTSLKHLVDRSYEVIGLWQIICESGFESSVDQMDPVQKD 281

Query: 467 ALQAASFRELLVGRQEVACLLLGSLVAGYLRDNASVDGISQKLRQLCPTLYRQXDATCXQ 646
            ++   F++L++   EV   L+ +L+  YL D++S D IS++LRQLCP+LY   DA C +
Sbjct: 282 RMRYMKFKDLVINGHEVCSGLISALMNCYLEDSSSTDAISERLRQLCPSLYSSDDAVCTK 341

Query: 647 GQRTLDCLPK 676
               L    K
Sbjct: 342 AGELLTLAKK 351



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 132 SAKHNGLYIYVGRILLPIWN 191
           S KH+GL +YV RIL  +W+
Sbjct: 133 SGKHDGLCLYVARILGTLWD 152


>SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)
          Length = 289

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 533 GSLVAGYLRDNASVDGISQKLRQLCPTLYRQXDATCXQGQRTLDC 667
           G +V G++ D  S   +S    ++CPT Y +    C + +   DC
Sbjct: 56  GHIVRGFV-DGKSFCSLSFDYGEMCPTSYVELGGKCDRTENGFDC 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,874,331
Number of Sequences: 59808
Number of extensions: 522248
Number of successful extensions: 1353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)