Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0209.Seq
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    52   6e-07
AL033514-6|CAA22096.2|  373|Caenorhabditis elegans Hypothetical ...    31   1.3  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AJ276590-1|CAB91651.1|  679|Caenorhabditis elegans LET-413 prote...    29   5.1  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF068716-10|AAC17752.2|  679|Caenorhabditis elegans Lethal prote...    29   5.1  
AF068716-9|AAT81195.1|  699|Caenorhabditis elegans Lethal protei...    29   5.1  
AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical ...    29   5.1  
Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    28   6.7  
U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in bl...    28   8.9  

>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
            complex protein protein8, isoform b protein.
          Length = 1090

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
 Frame = +2

Query: 332  SEEYTSLNALKLFVSMAIEMLNLWRVLCEHQFHVIAASLPADQQNALQAASFRELLVGRQ 511
            S E  SL  L+  +   +E L+LW +  E+    I++ +         +     L+    
Sbjct: 650  SLERHSLIGLRKLIDATLETLSLWLLAYEYNLTAISSGMNPQLLPNFSSRKLAHLVSDGS 709

Query: 512  EVACLLLGSLVAGYLRDNASVDGISQKLRQLCPTLYRQXDATCXQGQRTLDCLPKQQKNP 691
             +   L+ +++  +L D A    +S+ LRQLCP LY + DA        L+   KQ    
Sbjct: 710  NLNAELIRAMIKYFLGDEAGTKILSESLRQLCPNLYSEDDACVTFAMEQLEAARKQGPGA 769

Query: 692  TXRG--RNVCSMPLKTVXKIV 748
              R   ++   M  +++ K+V
Sbjct: 770  ARRRLVQSAVEMFKQSIGKVV 790


>AL033514-6|CAA22096.2|  373|Caenorhabditis elegans Hypothetical
           protein Y75B8A.6 protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 18  MTQQPQYSMSPTPYNQTSFNGNITQQQRDPNYPVPIEFSAKHNG 149
           MT  PQ+ +       TSF   + Q Q DP YP   E   +HNG
Sbjct: 310 MTHMPQHGLDIPYLIPTSFVQAV-QGQADPFYPSKFELDFEHNG 352


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +3

Query: 18   MTQQPQYSMSPTP-YNQTSFNGNI---TQQQRDPNYPVP 122
            M QQ QYS  P P Y Q+S+  N     Q  + PNY  P
Sbjct: 2732 MNQQGQYSQQPPPSYQQSSYPNNYQPGQQGNQPPNYQQP 2770


>AJ276590-1|CAB91651.1|  679|Caenorhabditis elegans LET-413 protein
           protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 106 LTTLCQLNLVRNTTASIFTSVEYCCRYGI*NASRNPRLRTVKNSC 240
           LT L +LNL RN+ A +  +++ C      N S NP  R  +  C
Sbjct: 81  LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETIC 125


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = +2

Query: 344 TSLNALKLFVSMAIEMLNLWRVLCEHQFHVIAASLPADQQNALQAASFRELLVGRQEVAC 523
           TSL AL L +       N  R L  H  +++  SLP +Q  +L A     L   RQ +  
Sbjct: 283 TSLPALPLILLQPSLPQNQLRSLPAHPLNLLQPSLPQNQLRSLPALPLILLQPSRQALPL 342

Query: 524 LLL 532
           +LL
Sbjct: 343 ILL 345


>AF068716-10|AAC17752.2|  679|Caenorhabditis elegans Lethal protein
           413, isoform a protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 106 LTTLCQLNLVRNTTASIFTSVEYCCRYGI*NASRNPRLRTVKNSC 240
           LT L +LNL RN+ A +  +++ C      N S NP  R  +  C
Sbjct: 81  LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETIC 125


>AF068716-9|AAT81195.1|  699|Caenorhabditis elegans Lethal protein
           413, isoform b protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 106 LTTLCQLNLVRNTTASIFTSVEYCCRYGI*NASRNPRLRTVKNSC 240
           LT L +LNL RN+ A +  +++ C      N S NP  R  +  C
Sbjct: 81  LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETIC 125


>AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical
           protein K03H6.5 protein.
          Length = 434

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 618 YNVGHNCRSFCEIPSTEALSRRYPATKDPRSKHATSCRPTSNSLK 484
           ++  H C ++     T+ L + YP T+D    H     PTS S+K
Sbjct: 176 HHFSHTCITYIACHGTQILGKCYPNTED---MHGRKINPTSLSVK 217


>Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 603 NCRSFCEIPSTEALSRRYPATKDPRSKHATSCRPTSNS 490
           N RS     S E  SRR  + + PRSK +   R +SNS
Sbjct: 225 NRRSRSRTRSRERTSRRSRSKESPRSKRSRRSRSSSNS 262


>Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 603 NCRSFCEIPSTEALSRRYPATKDPRSKHATSCRPTSNS 490
           N RS     S E  SRR  + + PRSK +   R +SNS
Sbjct: 225 NRRSRSRTRSRERTSRRSRSKESPRSKRSRRSRSSSNS 262


>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 423 WCSHSTLHRFNISIAIETNNFNAF 352
           WCS  T H+F +    E  NF+AF
Sbjct: 240 WCSFFTTHKFVLLFFSEFQNFSAF 263


>U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 10 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 587 QKLRQLCPTLYRQXDATCXQGQRTLDCLPKQQKNP 691
           Q+ +  C     Q +  C Q Q   DC P  Q+NP
Sbjct: 243 QQAQSTCDCAPVQQNPCCQQAQPACDCAPVVQQNP 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,596,636
Number of Sequences: 27780
Number of extensions: 379762
Number of successful extensions: 1028
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)