Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0207.Seq
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    27   2.0  
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    27   2.0  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    26   3.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   3.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   3.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   4.6  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    25   4.6  
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   6.1  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   6.1  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   6.1  
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1...    25   6.1  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   6.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.0  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = -3

Query: 447 GKRKTPFEQRVTILSGQSPTFPNIRTTTAN-SLQSS*RPRCHDAERS-STRALRPYSSEE 274
           G R T   + +  LSGQ+P F   R T     ++ + +  CH   R      +     + 
Sbjct: 27  GDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKV 86

Query: 273 RRSGTEKRDFKRPSQFSFG 217
           +    +KR+F     F FG
Sbjct: 87  KEYELKKRNFSATGNFGFG 105


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = -3

Query: 447 GKRKTPFEQRVTILSGQSPTFPNIRTTTAN-SLQSS*RPRCHDAERS-STRALRPYSSEE 274
           G R T   + +  LSGQ+P F   R T     ++ + +  CH   R      +     + 
Sbjct: 27  GDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKV 86

Query: 273 RRSGTEKRDFKRPSQFSFG 217
           +    +KR+F     F FG
Sbjct: 87  KEYELKKRNFSATGNFGFG 105


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 463 SVYLTRKTKNTVRTASYNIKRPVADISQHPNHDSEQPP 350
           S+ LTRK +NT R+    +  PV  ++ +   +S  PP
Sbjct: 228 SIMLTRKLENTTRSDQGYLASPVPFLNGNEPANSGLPP 265


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 255  SPFPSDAPLTSMDVERALSFAPRRGTAVFKSSG 353
            S FPSD   T   +ER+     R GTAVF+S+G
Sbjct: 1377 SHFPSDIEDT---IERSHPRIARGGTAVFQSAG 1406


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 408 LSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEE 274
           +S Q     N +T   NS +++       AE SST  + PY S +
Sbjct: 155 ISSQQKFHGNDKTLEKNSAKATINKSNSTAETSSTATVEPYDSND 199


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 350 RALEDRGATTRSEAQRALYVHTRQRSVARERRSVTSNAHRSSHLG 216
           + LE+RG   ++   +++    + + VAR +    S A  SS LG
Sbjct: 288 KKLENRGVKKKTSLHKSVIEGEKIKGVARRKLHPRSTAKLSSELG 332


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 463 SVYLTRKTKNTVRTASYNIKRPVADISQHPNHDSEQPP 350
           S+ LTRK +N VR+  +    PV  ++     D E PP
Sbjct: 301 SMMLTRKYENMVRSDMHYSAVPVPFLNGDEPRDYELPP 338


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 321 AERSSTRALRPYSSEERRSGTEKRDFKRPSQF 226
           +ER+ ++A+   SSE+      +RDF R ++F
Sbjct: 40  SERAISKAIDKTSSEKSNVNFNQRDFSRLNEF 71


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 245 KSRFSVPERRSSDEYGRRA 301
           KSR+++ +R SS EY RR+
Sbjct: 59  KSRYALTKRSSSSEYPRRS 77


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 321 AERSSTRALRPYSSEERRSGTEKRDFKRPSQF 226
           +ER+ ++A+   SSE+      +RDF R ++F
Sbjct: 40  SERAISKAIDKTSSEKSNVNFNQRDFSRLNEF 71


>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 321 AERSSTRALRPYSSEERRSGTEKRDFKRPSQF 226
           +ER+ ++A+   SSE+      +RDF R ++F
Sbjct: 40  SERAISKAIDKTSSEKSNVNFNQRDFSRLNEF 71


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 242 LKSRFSVPERRSSDEYGRRARVELRSASWHRGLQEL 349
           L++R    ERR+ D Y +    E+     H  +QEL
Sbjct: 441 LQARIQQLERRNEDMYNKLLAEEIIRRKLHNDIQEL 476


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 359  TASRALEDRGATTRSEAQRAL 297
            +AS  LEDR A  ++EAQR +
Sbjct: 1221 SASSNLEDRAARIKAEAQRRM 1241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,257
Number of Sequences: 5004
Number of extensions: 30197
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)