Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0207.Seq
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 32 0.28
08_02_0993 + 23390237-23390516,23391261-23391438,23391865-233919... 30 1.1
11_03_0128 - 10437407-10438049,10438097-10438272 29 1.5
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 29 1.5
10_08_0520 - 18495118-18498237 29 2.0
01_01_1127 + 8930593-8932681,8932812-8933401 29 2.0
09_04_0408 + 17352110-17352619,17352709-17352834,17353036-173532... 29 2.6
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900... 29 2.6
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 28 3.5
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355... 28 3.5
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867... 28 4.6
05_06_0224 + 26546066-26546830 28 4.6
12_02_0242 + 16213265-16213945,16216311-16216586,16217051-16217128 27 6.0
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 27 6.0
07_01_0361 - 2655442-2655706,2656339-2656466,2658428-2658438,265... 27 6.0
04_01_0051 - 542615-544066 27 6.0
02_05_1245 + 35223504-35224778 27 6.0
01_01_0062 + 497728-497922,499444-499481,499576-499598,501156-50... 27 8.0
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 31.9 bits (69), Expect = 0.28
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -3
Query: 378 IRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERR 268
++T T + +S RPR D+E ++ L PYSSE++R
Sbjct: 442 MQTITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478
>08_02_0993 +
23390237-23390516,23391261-23391438,23391865-23391940,
23392037-23392212,23392296-23392377,23392639-23392716,
23393525-23393686,23393980-23394243,23394698-23394802,
23395304-23395447
Length = 514
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 218 PNENCDGRLKSRFSVPERRSSDEYGRRAR 304
P E D +K RF VP D+YG +AR
Sbjct: 441 PREETDSIIKERFPVPRLVVCDQYGSQAR 469
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 169 SSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 71
S S + STTCRT RA + C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 201 SVSRHTQMRTAMGV*SHASPFPSDAPLTSMDVERAL 308
SVS + R A V +S FPS P T DV R L
Sbjct: 139 SVSSRRRARRAAAVTRRSSAFPSSTPPTQEDVRRGL 174
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 296 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 397
RAR+ L A G + +W A+V R LGNV +
Sbjct: 751 RARILLSKARERGGTERVWMKSAIVERELGNVDE 784
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 296 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 397
RAR+ L A G + +W A+V R LGNV +
Sbjct: 656 RARILLSKARERGGTERVWMKSAIVERELGNVDE 689
>09_04_0408 +
17352110-17352619,17352709-17352834,17353036-17353209,
17353669-17353830,17353998-17354140,17354835-17354910,
17355445-17355589,17355847-17355896,17356001-17356078,
17357153-17357314,17357406-17357669,17357929-17358033,
17358158-17358247,17358344-17358346
Length = 695
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 218 PNENCDGRLKSRFSVPERRSSDEYGRRAR 304
P+E D ++ RF VP D+YG +AR
Sbjct: 639 PHEEADTIIRERFPVPRLVVCDQYGSQAR 667
>03_02_0507 -
8999902-9000649,9001106-9001225,9001314-9001394,
9001591-9001613
Length = 323
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -1
Query: 446 ENEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDR-GATTRSEAQRALYVHTRQRSV 270
E+ KHRS+SE + SR+H + ++ +D+ R E +R R+R
Sbjct: 187 ESGKHRSHSEKRKHKKSRKHKRRYDDSSDESNSESDDKESKRRRKEEKRLRKEERRRRRE 246
Query: 269 ARERRSVTSNAHR 231
R RR A +
Sbjct: 247 ERHRRKADRQASK 259
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 401 ASRRHFPTSEPRQRTASRALEDRGATTRSEAQRALYVHTRQRSVARE 261
A+RR P+ PR S + D+ ATT + H S ARE
Sbjct: 16 AARRSSPSPGPRPAAGSSVVRDKDATTMMRRRLYQQQHPPSSSGARE 62
>01_06_1822 -
40132919-40133208,40134313-40134398,40135067-40135566,
40135708-40135905
Length = 357
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 249 HASPFPSDAPLTSMDV-ERALSFAPRRGTAVFKSSGGCSLSW 371
H PF + + DV +A+ A A F S GGC++SW
Sbjct: 61 HTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSW 102
>08_02_0157 -
13385589-13385675,13386187-13386357,13386572-13386792,
13390090-13390240,13390682-13390726,13391121-13391330
Length = 294
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 220 WVWRLTDHLTTASNGSDSSSRGT 152
WV L + +TTASN D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185
>05_06_0224 + 26546066-26546830
Length = 254
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 269 RRSSDEYGRRARVELRSASWHRGLQELWRLFAVVVRMLGNVGDWPL 406
RR D YG + + + H G+++ + A++ R LG W +
Sbjct: 23 RRVVDMYGHHVGFKAKVVALHGGIRQARAVHAILSRQLGGEKKWEI 68
>12_02_0242 + 16213265-16213945,16216311-16216586,16217051-16217128
Length = 344
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 249 HASPFPSDAPLTSMDVERALSFAPRR 326
H SP+P PL+ +D AL+ A RR
Sbjct: 268 HQSPYPLPLPLSLLDTVAALATARRR 293
>10_08_0818 +
20801061-20801298,20801409-20801509,20801600-20801817,
20802461-20802824
Length = 306
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -2
Query: 424 TASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGN 260
TA N +++ Q+P H E ELL T VP L T++ VRG+ GN
Sbjct: 105 TAGVNTAFYLSNTEQYPGHHDEIDMELLGT-VPGEPYTL---QTNVYVRGSGDGN 155
>07_01_0361 -
2655442-2655706,2656339-2656466,2658428-2658438,
2659586-2659704,2659746-2659906,2660115-2660132
Length = 233
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 311 LRSASWHRGLQELWRLFAV-VVRMLGNVGDWPLNIVTR 421
LRS W + + LW F+V +V L +V W L + +R
Sbjct: 58 LRSFEWLKQIVALWSQFSVNLVITLEDVAPWLLTVASR 95
>04_01_0051 - 542615-544066
Length = 483
Score = 27.5 bits (58), Expect = 6.0
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = -2
Query: 307 NARSTSILVRGASLGN--GEA*LQTPIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTC 134
N ST + + A+ N G A L TP+ + WR D+ TTA+ S + +T+
Sbjct: 68 NNGSTILHLTPAASSNKSGTALLPTPVTL----WRRLDYQTTAAQPGSYSKQDASLNTSF 123
Query: 133 RTARRAYSKARM--ACDTGGKASWLLKAWLF*VLKT 32
T R Y+ A+ A D A+ L F ++ T
Sbjct: 124 -TMRVQYANAKYSPADDAAAAAAGLNNGLAFVIVPT 158
>02_05_1245 + 35223504-35224778
Length = 424
Score = 27.5 bits (58), Expect = 6.0
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = -2
Query: 445 KTKNTVRTASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASL 266
KTK++V TAS A + H ++ P T + +A ST+ ++
Sbjct: 30 KTKSSVATASMAASASTATTPRKHQHQHQRSPRATATQYSTTSSS-SAPSTATATSSSTA 88
Query: 265 GNGEA*LQTPIAVLIWVWRLTDH-LTTASNGSDSSSRGTEYSTTCRTARRAYSKA 104
+ +A L+ + L + LT H L A+ SS R ST+ R + R +S A
Sbjct: 89 ASLQA-LRDSLPDLPLL--LTFHELAAATANFSSSHRLAPNSTSFRCSLRGHSAA 140
>01_01_0062 +
497728-497922,499444-499481,499576-499598,501156-501262,
501356-501407,501475-501559,501910-502000,502251-502289,
502383-502455,503285-503344,503439-503512,503606-503698,
503779-503880,504048-504128,504352-504426,504486-504614,
504705-504809
Length = 473
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 326 TTRSEAQRALYVHTRQRSVARERRSVTSNAHRSSHLGMAAH 204
TTR++ R +Y H + ++V E V + + +LG+A H
Sbjct: 263 TTRADLHRTVYTHAKVKAV--ELMLVDALVEANEYLGIALH 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,546,763
Number of Sequences: 37544
Number of extensions: 232783
Number of successful extensions: 859
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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