Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0206.Seq
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 83 3e-16
07_01_0578 + 4295386-4296489,4297394-4297507 80 2e-15
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.21
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 32 0.37
03_01_0123 + 965657-966214,967827-967995,968632-969236,969333-96... 31 0.86
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 30 2.0
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 2.6
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 28 6.0
03_01_0147 - 1170481-1171260,1171332-1171511 28 8.0
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 82.6 bits (195), Expect = 3e-16
Identities = 38/61 (62%), Positives = 40/61 (65%)
Frame = +2
Query: 254 QTSAESWGTGRAVARIPXXXXXXXXXXXXXXXXNMCRXXRXFAPTKPWRRWHRRVNLRQR 433
QTSAESWGTGRAV+RIP NMCR R FAPTK WRRWHRRVN+R R
Sbjct: 64 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLR 123
Query: 434 R 436
R
Sbjct: 124 R 124
Score = 58.0 bits (134), Expect = 7e-09
Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +3
Query: 75 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 251
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 252 HK 257
H+
Sbjct: 63 HQ 64
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 484 VQXRGHIIXRXPSFPXVXTXKVQEINKXKQS 576
V RGH I P FP V + ++ I K QS
Sbjct: 140 VLARGHRIEGVPEFPLVVSDSIESIEKTAQS 170
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/61 (59%), Positives = 39/61 (63%)
Frame = +2
Query: 254 QTSAESWGTGRAVARIPXXXXXXXXXXXXXXXXNMCRXXRXFAPTKPWRRWHRRVNLRQR 433
QTSAESWGTGRAV+RIP NMCR R FAPTK WR+WHRRVN+ R
Sbjct: 65 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLR 124
Query: 434 R 436
R
Sbjct: 125 R 125
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Frame = +3
Query: 84 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHK 257
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGH+
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +2
Query: 47 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 202
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 47 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 202
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>03_01_0123 +
965657-966214,967827-967995,968632-969236,969333-969434
Length = 477
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 218 EAALLREQGGWSQTSAESWGTGRAV 292
EAALLR G W++ + + WG G V
Sbjct: 367 EAALLRAAGDWARGAGQRWGVGDVV 391
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 47 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 202
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 47 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 202
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 171 RPDLVNDVHVSMSKNSRQP--YCVSKEAGHKPVPNHGVPD 284
RP + DV S S +S P SK++GH V HG D
Sbjct: 38 RPSSITDVSRSCSSSSSSPPRSLSSKQSGHADVLAHGAVD 77
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 41 GIASLK*R-NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 202
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,684,671
Number of Sequences: 37544
Number of extensions: 271384
Number of successful extensions: 799
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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