Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0206.Seq
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    80   2e-15
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    80   2e-15
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   2.2  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   5.0  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 36/61 (59%), Positives = 39/61 (63%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPXXXXXXXXXXXXXXXXNMCRXXRXFAPTKPWRRWHRRVNLRQR 433
           QTSAESWGTGRAV+RIP                NMCR  R FAPTK WRRWHRRVN+  +
Sbjct: 67  QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 126

Query: 434 R 436
           R
Sbjct: 127 R 127



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
 Frame = +3

Query: 75  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 248
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 249 GHK 257
           GH+
Sbjct: 65  GHQ 67


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 36/61 (59%), Positives = 39/61 (63%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPXXXXXXXXXXXXXXXXNMCRXXRXFAPTKPWRRWHRRVNLRQR 433
           QTSAESWGTGRAV+RIP                NMCR  R FAPTK WRRWHRRVN+  +
Sbjct: 66  QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 125

Query: 434 R 436
           R
Sbjct: 126 R 126



 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
 Frame = +3

Query: 66  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 239
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 240 KEAGHK 257
           K+AGH+
Sbjct: 61  KKAGHQ 66


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 90  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 236
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 141 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 236
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 141 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 236
           P+PF  K+P +PD++   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,079,580
Number of Sequences: 28952
Number of extensions: 190421
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)