Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0205.Seq
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747...    28   7.2  

>02_03_0273 +
           17173983-17174339,17174423-17174575,17174638-17174700,
           17174943-17175026,17175120-17175242,17175466-17175519,
           17175669-17175764,17176163-17176258,17177179-17177324,
           17178503-17178632,17178697-17179272,17179364-17179462,
           17179535-17179687,17179794-17180558,17181384-17181683
          Length = 1064

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 195 EKVSLIRSVNH*KCKCYYLLTSSVSLC 275
           EK  L+  + H K + +Y+L+SS++LC
Sbjct: 745 EKEVLLEEIQHLKNQLHYMLSSSMALC 771


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,514,073
Number of Sequences: 37544
Number of extensions: 130436
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)