Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0204.Seq
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 31 0.25
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 29 0.77
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.3
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar... 27 2.4
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 27 3.1
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 4.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.4
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 26 7.2
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 25 9.5
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 30.7 bits (66), Expect = 0.25
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +2
Query: 425 CSRCLQMINENNKIEIDKQAFHSHCAKCIFATRFHRPTSTSAMVKSSASLASNITSCTDI 604
C +C + + +++ + +HS C KC+ + P+S + + C DI
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKL--CVDI 81
Query: 605 ---RTTPMNFFQAMLSSXSRXP 661
+TP+ F A+ +S + P
Sbjct: 82 CNGCSTPICEFNAVSNSQANHP 103
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 29.1 bits (62), Expect = 0.77
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 309 STQTGPSGL-VESLEMVRRGIILEQAANQRPLKGILNAASALDAFK*STRITKLKLTSRP 485
S+ T PS + S +V R A KG+ NAAS+ +F S I+K TSR
Sbjct: 589 SSPTKPSTTSLRSQSLVNRFASSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKLETSRL 648
Query: 486 SIVTVPSAFLPHGSIVQ 536
S +P + + S ++
Sbjct: 649 STKKLPGSTMKAASALK 665
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 562 FCEPCFQHHVLHRHKDNPN 618
FC PC + LH HKDNPN
Sbjct: 17 FCGPCRR---LHYHKDNPN 32
>SPAC343.14c |||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 48 HTYPKKSSLIMDKGQEQVKKPF 113
HTYP SSLI D +V+ PF
Sbjct: 8 HTYPAVSSLIADLKSRKVQGPF 29
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 632 LERNSLGLSLCRCKT*CWKQGSQKT 558
LERN + S CR K W Q +KT
Sbjct: 274 LERNRIAASKCRQKKKLWTQNLEKT 298
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 365 DNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA 484
D+P +S E+ EG+ + S+ S +++++ E +KQA
Sbjct: 557 DSPNVASGVESDEGSEEISLDSEYSDILSDDGDFEKEKQA 596
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 533 PTSTSAMVKSSASLASNITSCTDIRTTP 616
P STS+ SS+ L S TSCT + P
Sbjct: 319 PASTSSTGTSSSPLPSTSTSCTTSTSIP 346
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 533 PTSTSAMVKSSASLASNITSCTDIRTTP 616
P STS+ SS+ L S TSCT + P
Sbjct: 373 PASTSSTGTSSSPLLSTSTSCTTSTSIP 400
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 533 PTSTSAMVKSSASLASNITSCTDIRTTP 616
PTSTS+ +S+ L + TSCT + P
Sbjct: 209 PTSTSSTDTNSSPLPTTSTSCTTSTSIP 236
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 533 PTSTSAMVKSSASLASNITSCTDIRTTP 616
PTSTS+ +S+ L + TSCT + P
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIP 292
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 482 AFHSHCAKCIFATRFHRPTSTSAMVKSSASLASNITSCTDIRTTPMN 622
A+H H +F + + + + SS SLA N S + + TP+N
Sbjct: 710 AYH-HTLMWLFRSIGETENNQLSKISSSVSLAGNTVSFSPVSHTPIN 755
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 350 NGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENN 460
+G + D+ ASS+S AS G RSV R + E++
Sbjct: 517 DGADNDDSSASSESFASAGAHSRSVFPRRSNVSEESH 553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,819
Number of Sequences: 5004
Number of extensions: 65492
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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