Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0204.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_32869| Best HMM Match : Toxin_7 (HMM E-Value=3.9)                   29   4.4  
SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)              29   4.4  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      29   5.8  
SB_14512| Best HMM Match : IncA (HMM E-Value=0.12)                     28   7.6  

>SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/84 (25%), Positives = 33/84 (39%)
 Frame = +2

Query: 194 VLRLQNNSVGGEDVLRARILHGCFKQHVLDRFRGECPSVHTNWAQWTCGKFGNGQEGDNP 373
           V+    +S  G D++         K  VL  + GE P   +    WTC K   G   ++ 
Sbjct: 613 VMDSSRSSCRGADIVHLPNQIAACKSCVLTHYGGEYPVQGSVPCCWTCVKCPRGSIKNST 672

Query: 374 GASSKSEASEGNTKRSVCSRCLQM 445
           G        +G T  +  S CL++
Sbjct: 673 GTGGCVPCDKGYTSDAGNSECLKL 696


>SB_32869| Best HMM Match : Toxin_7 (HMM E-Value=3.9)
          Length = 910

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 291 EANVHLSTQTGPSGLVESLEMVRRGIILEQAANQRPLKGILNAASAL 431
           EA   LS + GP  L   L+  R     ++ A QRPL  I +AAS +
Sbjct: 402 EAQEVLSLRQGPVRLARMLKTPRARKARDEFAGQRPLFAICDAASLM 448


>SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)
          Length = 571

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 481 GLP*SLCQVHFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHK 606
           G P S C  +     PSS +H   G+++C+P  Q   + R +
Sbjct: 286 GKPYSTCDCNCGSAAPSSRLHDIKGRIWCQPDSQQLKVFREE 327


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +2

Query: 272 HVLDRFRGECPSV--HTNWAQWTCGKFGNGQEG--DNPGASSKSEASEGNTKRSVCSRCL 439
           H   R    C  +  H+N +  +C K GN  +    +   SS S    GN+ + + S   
Sbjct: 150 HCYKRRGNSCQDIPSHSNTSSDSCKKRGNSCQDIPSHSNTSSDSCQKRGNSCQDIPSHSK 209

Query: 440 QMINENNKIEIDKQAFHSHC 499
           Q  +    +  DK+A  S C
Sbjct: 210 QSSDGTIHVTKDKEAITSSC 229


>SB_14512| Best HMM Match : IncA (HMM E-Value=0.12)
          Length = 642

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 482 AFHSHCAKCIFATRFHRPTSTSAMVKSSASL 574
           A+ S CA+C+  +    P + +A   SS SL
Sbjct: 433 AYSSFCARCLICSAIEAPAAVAAFFLSSTSL 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,697,731
Number of Sequences: 59808
Number of extensions: 522792
Number of successful extensions: 1694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1692
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)