Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0204.Seq
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeo... 31 0.96
AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein. 31 0.96
AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical ... 31 0.96
AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear recep... 31 0.96
AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear recep... 31 0.96
AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear recep... 31 0.96
AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox ... 31 0.96
U50135-6|AAN63429.1| 925|Caenorhabditis elegans Hypothetical pr... 29 5.1
U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated p... 28 8.9
AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein. 28 8.9
>U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeobox
protein 14 protein.
Length = 351
Score = 31.1 bits (67), Expect = 0.96
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 383 SKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKC 508
S A N + ++CS C + I + +++ + +HS C +C
Sbjct: 34 SNVNAGHPNNEEAICSLCDKKIRDRFVSKVNGRCYHSSCLRC 75
>AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein.
Length = 474
Score = 31.1 bits (67), Expect = 0.96
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +2
Query: 335 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCIF 514
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 100 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 157
Query: 515 ATRFHRPTSTSAM 553
+ T A+
Sbjct: 158 RKCISKGMLTEAV 170
>AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical
protein Y15E3A.1a protein.
Length = 474
Score = 31.1 bits (67), Expect = 0.96
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +2
Query: 335 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCIF 514
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 100 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 157
Query: 515 ATRFHRPTSTSAM 553
+ T A+
Sbjct: 158 RKCISKGMLTEAV 170
>AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 476
Score = 31.1 bits (67), Expect = 0.96
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +2
Query: 335 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCIF 514
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 102 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 159
Query: 515 ATRFHRPTSTSAM 553
+ T A+
Sbjct: 160 RKCISKGMLTEAV 172
>AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 31.1 bits (67), Expect = 0.96
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +2
Query: 335 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCIF 514
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 101 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 158
Query: 515 ATRFHRPTSTSAM 553
+ T A+
Sbjct: 159 RKCISKGMLTEAV 171
>AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 31.1 bits (67), Expect = 0.96
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +2
Query: 335 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCIF 514
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 101 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 158
Query: 515 ATRFHRPTSTSAM 553
+ T A+
Sbjct: 159 RKCISKGMLTEAV 171
>AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox
protein CEH-14 protein.
Length = 351
Score = 31.1 bits (67), Expect = 0.96
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 383 SKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKC 508
S A N + ++CS C + I + +++ + +HS C +C
Sbjct: 34 SNVNAGHPNNEEAICSLCDKKIRDRFVSKVNGRCYHSSCLRC 75
>U50135-6|AAN63429.1| 925|Caenorhabditis elegans Hypothetical
protein C52E12.1 protein.
Length = 925
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 488 HSHCAKCIFATRFHRPTSTSAMVKSSASLASNITSCTDIRTTPMNF 625
H CA+C+ R + T + +S + S T+ D+ P++F
Sbjct: 106 HPVCAECVIRMRILGNSKTCPVCRSDIDILSFCTTDDDLANVPLSF 151
>U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated
protein 97 protein.
Length = 348
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 416 RSVCSRCLQMINENNKIEIDKQAFHSHCAKC 508
R VC +C MI++ I+ +FH + KC
Sbjct: 143 RYVCHKCHAMIDDGQHIKFRGDSFHPYHFKC 173
>AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein.
Length = 348
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 416 RSVCSRCLQMINENNKIEIDKQAFHSHCAKC 508
R VC +C MI++ I+ +FH + KC
Sbjct: 143 RYVCHKCHAMIDDGQHIKFRGDSFHPYHFKC 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,218,563
Number of Sequences: 27780
Number of extensions: 387341
Number of successful extensions: 1055
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -