Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0201.Seq
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    24   1.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   4.9  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   6.5  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   6.5  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 492 QIYQTAYHKELVPHTSLPEHV 554
           +IYQT    +  PH  LP+HV
Sbjct: 79  RIYQTLLSGKNHPHIQLPKHV 99


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 668 NLQPGQLVXDFHCH-H*HSGV*PKSPELXGARXPEPG 775
           +++ G +V   H H H H G   + P+  GA  P+PG
Sbjct: 12  DMRNGGVVSAEHPHQHQHYGAAVQVPQGGGAVQPDPG 48


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 153 WSPVCXTCCXNYDPRDHGGIQI 218
           WS +   C     P+  GG+QI
Sbjct: 38  WSDIADVCERFLAPKGFGGVQI 59


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 153 WSPVCXTCCXNYDPRDHGGIQI 218
           WS +   C     P+  GG+QI
Sbjct: 37  WSDIADECERFLAPKGFGGVQI 58


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 153 WSPVCXTCCXNYDPRDHGGIQI 218
           WS +   C     P+  GG+QI
Sbjct: 38  WSDIADECERFLAPKGFGGVQI 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,169
Number of Sequences: 336
Number of extensions: 3392
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)