Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0200.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    36   0.005
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   1.0  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.4  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   4.1  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   7.2  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   7.2  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   9.5  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 446 VSWKLIALWENNKVYFKIL--NTNVTNTWYWESALTGTATIWAFGVNSVDSFRAQWYLQP 619
           +SWK +  +E +  Y   L  N   TNT +  S L GT  +W+FG +SV +F  Q + + 
Sbjct: 129 MSWKCVQTFEGHSRYVMSLAINPKDTNT-FASSCLDGTVKVWSFG-SSVANFTLQAHDRG 186

Query: 620 AKYDN 634
             Y N
Sbjct: 187 VNYVN 191


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 349 VHKLNRVFGEDKSELNWETIPDDVL 275
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 105 QLYNSVVVADYDSAVEKSKHLYEEKKS 185
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 264 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 365
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 294 VSQLSSDLSSPKTRLSLCTSATV 362
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 467 LWENNKVYFKILNTNVTNTWYWESALTGTAT 559
           LW N+ VY+ + +++ T T     ++T T+T
Sbjct: 737 LWANDAVYYPVSSSSTTTTSTSTGSVTTTST 767


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 24/97 (24%), Positives = 41/97 (42%)
 Frame = +3

Query: 72   DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYA 251
            DS     + +E     + V + D A+E      EE+K   +T VV+ +I N  +    Y 
Sbjct: 1051 DSCTAYGVWDESWAQKISVVNGDLALENWG--IEERKWNKLTEVVDYVIHNGALVHWVYP 1108

Query: 252  YNFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATV 362
            Y+   R P     I +     L   K+   + +++TV
Sbjct: 1109 YS-KLRGPNVMGTITALKLCSLGKGKSLSFVSSTSTV 1144


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 487 LLQDLEH*RNQYLVLGVGTNWNGDHMGL 570
           LLQ+L H   +++V  +G+N N DH+ +
Sbjct: 450 LLQELSH---EHIVQYLGSNLNSDHLNI 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,690
Number of Sequences: 5004
Number of extensions: 52920
Number of successful extensions: 215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)