Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0200.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.17 
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   1.2  
At3g55550.1 68416.m06168 lectin protein kinase, putative similar...    29   4.7  
At5g56690.1 68418.m07076 F-box family protein contains F-box dom...    28   6.2  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 3   LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 182
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 183 SEVITNV 203
             +  N+
Sbjct: 214 GSIAPNL 220


>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 273 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 365
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At3g55550.1 68416.m06168 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 684

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 693 RFKPSGQRMALGLQRQELIREVPEQLTLWGY*KAF 797
           RFKP G   AL       I  VPE +TL G+  AF
Sbjct: 72  RFKPIGVNRALSFSTSFAIAMVPEFVTLGGHGLAF 106


>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 575 VNSVDSFRAQWYLQPAKYDNDVLFYIY 655
           +NS+++FR +WY    + D D L  I+
Sbjct: 362 LNSLETFRVKWYYSEEQEDRDFLSLIF 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,615
Number of Sequences: 28952
Number of extensions: 280884
Number of successful extensions: 990
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)