Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0198.Seq
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0977 + 23227081-23228004,23228244-23228315,23229788-232298... 34 0.15
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 30 1.9
07_03_0775 - 21413522-21413797,21414016-21414178,21414274-214143... 30 2.5
03_06_0341 - 33261210-33261327,33261411-33262057,33262950-332630... 29 4.3
03_02_0310 + 7315185-7316820,7318332-7318879 29 4.3
11_06_0141 + 20559828-20559986,20560074-20560281,20560375-205604... 29 5.7
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743... 29 5.7
06_01_1196 + 10289708-10289823,10290828-10291541,10291614-102920... 28 7.5
08_02_0919 - 22627147-22627326,22627646-22627726,22627827-226281... 28 9.9
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 28 9.9
>08_02_0977 +
23227081-23228004,23228244-23228315,23229788-23229841,
23231763-23231840,23233080-23233173,23233352-23233423,
23233537-23233584,23233608-23233777,23234016-23234088,
23234850-23235199
Length = 644
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/59 (28%), Positives = 39/59 (66%)
Frame = +2
Query: 200 RHQNSISQSRKSRIRDYSLNRQNEIQQLKESFILQQQKREDLNKYKEFVHSEYQENTRL 376
+++ S ++SR +R + Y++ + E+Q+LKE + Q+K+E++ + ++ E Q+N +L
Sbjct: 295 KNRESAARSR-ARKQAYTMELEAEVQKLKEQNMELQKKQEEIMEMQKNFFPEMQKNQKL 352
>09_01_0076 +
1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 215 ISQSRKSRIRDYSLNRQNEIQQLKESFILQQQKREDLNKYKEFVHSEYQENTRLLFAHKQ 394
+ Q +I D ++N++Q LKE +Q+ E K +E +HS + +L KQ
Sbjct: 589 VIQDLDLQILDLKKKQENQVQLLKE----KQKSDEAAKKLQEEIHSIKAQKVQLQHKIKQ 644
Query: 395 QLEQ 406
+ EQ
Sbjct: 645 EAEQ 648
>07_03_0775 -
21413522-21413797,21414016-21414178,21414274-21414351,
21415983-21416176
Length = 236
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 263 QNEIQQLKESFILQQQKREDLNKYKEFVHSEYQENTRLLFAHKQQLEQEVK 415
++E Q+LKES Q+K ++L K + E Q+ L A K+ LEQ++K
Sbjct: 124 RSEAQKLKESNESLQEKIKELKAEKNELRDEKQK----LKAEKESLEQQIK 170
>03_06_0341 -
33261210-33261327,33261411-33262057,33262950-33263061,
33263313-33264097,33264797-33264867,33266323-33266635
Length = 681
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/87 (25%), Positives = 46/87 (52%)
Frame = +2
Query: 164 YGSTIGKIRMGSRHQNSISQSRKSRIRDYSLNRQNEIQQLKESFILQQQKREDLNKYKEF 343
YGS + RH + Q ++ + + +Q QQ ++ F QQQ+++ ++++
Sbjct: 495 YGSLTRQQLQQLRHHQLLQQQQQQFQQQQQVQQQQ--QQQQQQFQHQQQQQQ--QQFQQ- 549
Query: 344 VHSEYQENTRLLFAHKQQLEQEVKLRQ 424
H + Q++ +L H+QQ +Q +L+Q
Sbjct: 550 QHQQQQQSQQLQQQHQQQ-QQPQQLQQ 575
>03_02_0310 + 7315185-7316820,7318332-7318879
Length = 727
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 645 CSIACDVTRSSL*SSSPFLQGSTFTTHLRFQCIS 544
C +AC + R+ + P L+G TT ++FQC++
Sbjct: 434 CHVACALERNLI-RPGPTLKGPIGTTEMQFQCLA 466
>11_06_0141 +
20559828-20559986,20560074-20560281,20560375-20560433,
20560532-20560590,20560809-20560886,20560974-20561073,
20561174-20561245,20561327-20561434,20561677-20561730,
20562847-20563296
Length = 448
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 260 RQNEIQQLKESFILQQQ---KREDLNKYKEFVHSEYQENTRLLFAHKQQLEQEVKL 418
R+N SF LQ++ ++E K +E +H++ E T L K+ E E+KL
Sbjct: 199 RKNAAAAAGFSFRLQERAEKRKEFYQKLEEKIHAKELEQTNLQAKSKESQEAEIKL 254
>03_02_0762 - 10968888-10969466,10972522-10974175,10974277-10974359,
10974435-10974533,10974620-10974706,10974782-10974838,
10974939-10975065,10975344-10975465,10975685-10975732,
10975867-10976268
Length = 1085
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 194 GSRHQNSISQSRKSRIRDYSLNRQNE-IQQLKESFILQQQKREDLNKYKEFVHSEYQE 364
GS+H+N + RK R S N+ +E +Q K+ + Q+ E++ + E + ++Q+
Sbjct: 921 GSKHKNIHQKVRKPRAFRISRNQASEKSEQQKQQHVSNNQEYEEIEE-GELIEQDHQD 977
>06_01_1196 +
10289708-10289823,10290828-10291541,10291614-10292058,
10292329-10293642
Length = 862
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 369 LASYLLTSSSWSRKLNYGSWLVVKQMDL 452
LASYL T + R N GSW++V D+
Sbjct: 265 LASYLRTELNERRNNNKGSWVIVTTRDV 292
>08_02_0919 -
22627147-22627326,22627646-22627726,22627827-22628103,
22629451-22629755,22629835-22629987,22630318-22631076
Length = 584
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/81 (17%), Positives = 41/81 (50%)
Frame = +2
Query: 194 GSRHQNSISQSRKSRIRDYSLNRQNEIQQLKESFILQQQKREDLNKYKEFVHSEYQENTR 373
G R ++++ R+ R+ S+ ++QQL+E + +++ E+ + + +E + +
Sbjct: 428 GRRSLDTVNPRRRQRLNGESVA---QLQQLEEQLLELEKEEEEHHMRRMQALNEMDQESE 484
Query: 374 LLFAHKQQLEQEVKLRQLACS 436
+F H++ + ++ C+
Sbjct: 485 NVFRHQEYIISTIEFLSKQCN 505
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 182 KIRMGSRHQNS-ISQSRKSRIRDYSLNRQNEIQQLKESFILQQQKREDLNKYKE 340
+++M +++ ++Q KS D N ++E+ QLKE +Q + LNK E
Sbjct: 1093 EVKMAHEEKDATLTQLEKSE--DSIKNLESELAQLKEELSVQMESNSSLNKQLE 1144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,305,013
Number of Sequences: 37544
Number of extensions: 295522
Number of successful extensions: 712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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