Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0197.Seq
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 201 1e-52
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 200 1e-52
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 200 1e-52
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 104 1e-23
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 100 2e-22
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 75 2e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.003
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.009
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.009
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.020
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.035
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.25
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.33
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.57
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 29 0.57
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.76
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 4.0
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 26 7.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 9.4
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.4
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 201 bits (490), Expect = 1e-52
Identities = 104/175 (59%), Positives = 123/175 (70%), Gaps = 2/175 (1%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTRE
Sbjct: 76 ALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTRE 135
Query: 436 HALLAFTLGVKQLIVGVNKMDSTEHHTVSPDLRKSRRKYPHTFKKIGYNPAAVAFVPISG 615
HALLA+TLGVKQLIV VNKMD+T + ++ + KK+G+NP V FVP+SG
Sbjct: 136 HALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVPVSG 193
Query: 616 WHGDNMLEPSTKM--LGSXDGSGA*GRPS*XEMPH*SLDAILPTARPTDKPXVFP 774
+ GDNM+EP+T M G + ++D+I P ARPTDKP P
Sbjct: 194 FQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE-AIDSIEPPARPTDKPLRLP 247
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 212
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 213 DKLKAERE 236
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 38.3 bits (85), Expect = 0.001
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +3
Query: 507 TPYSEPRFEEIKKEVSSYIQEDWLQPSCCRFRAHFWMARRQHVGAFNQNAWFXGWQWSVR 686
T +S+ RFEEI KE S++I++ P F + W+ GWQ +
Sbjct: 158 TGWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETK 217
Query: 687 KAKLTGNASLKS--RCHPANCPAH*QALXLSLQDV 785
+ G L++ P P + L L LQDV
Sbjct: 218 AGVVKGKTLLEAIDSIEPPARPTD-KPLRLPLQDV 251
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 200 bits (489), Expect = 1e-52
Identities = 103/175 (58%), Positives = 123/175 (70%), Gaps = 2/175 (1%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTRE
Sbjct: 76 ALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTRE 135
Query: 436 HALLAFTLGVKQLIVGVNKMDSTEHHTVSPDLRKSRRKYPHTFKKIGYNPAAVAFVPISG 615
HALLA+TLGVKQLIV VNKMD+T + ++ + KK+G+NP V FVP+SG
Sbjct: 136 HALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVPVSG 193
Query: 616 WHGDNMLEPSTKM--LGSXDGSGA*GRPS*XEMPH*SLDAILPTARPTDKPXVFP 774
+ GDNM+EP+T M G + ++D+I P ARPTDKP P
Sbjct: 194 FQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE-AIDSIEPPARPTDKPLRLP 247
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 212
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 213 DKLKAERE 236
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 38.3 bits (85), Expect = 0.001
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +3
Query: 507 TPYSEPRFEEIKKEVSSYIQEDWLQPSCCRFRAHFWMARRQHVGAFNQNAWFXGWQWSVR 686
T +S+ RFEEI KE S++I++ P F + W+ GWQ +
Sbjct: 158 TGWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETK 217
Query: 687 KAKLTGNASLKS--RCHPANCPAH*QALXLSLQDV 785
+ G L++ P P + L L LQDV
Sbjct: 218 AGVVKGKTLLEAIDSIEPPARPTD-KPLRLPLQDV 251
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 200 bits (489), Expect = 1e-52
Identities = 103/175 (58%), Positives = 123/175 (70%), Gaps = 2/175 (1%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTRE
Sbjct: 76 ALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTRE 135
Query: 436 HALLAFTLGVKQLIVGVNKMDSTEHHTVSPDLRKSRRKYPHTFKKIGYNPAAVAFVPISG 615
HALLA+TLGVKQLIV VNKMD+T + ++ + KK+G+NP V FVP+SG
Sbjct: 136 HALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVPVSG 193
Query: 616 WHGDNMLEPSTKM--LGSXDGSGA*GRPS*XEMPH*SLDAILPTARPTDKPXVFP 774
+ GDNM+EP+T M G + ++D+I P ARPTDKP P
Sbjct: 194 FQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE-AIDSIEPPARPTDKPLRLP 247
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 212
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 213 DKLKAERE 236
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 38.3 bits (85), Expect = 0.001
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +3
Query: 507 TPYSEPRFEEIKKEVSSYIQEDWLQPSCCRFRAHFWMARRQHVGAFNQNAWFXGWQWSVR 686
T +S+ RFEEI KE S++I++ P F + W+ GWQ +
Sbjct: 158 TGWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETK 217
Query: 687 KAKLTGNASLKS--RCHPANCPAH*QALXLSLQDV 785
+ G L++ P P + L L LQDV
Sbjct: 218 AGVVKGKTLLEAIDSIEPPARPTD-KPLRLPLQDV 251
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 104 bits (250), Expect = 1e-23
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Frame = +1
Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370
Query: 448 AFTLGVKQLIVGVNKMDSTEHHTVSPDLRKSRRKYPHTFKKI-GYNPAA-VAFVPISGWH 621
A T G+ L+V +NKMD ++ K +++ GYN V ++P+S +
Sbjct: 371 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYT 430
Query: 622 GDNM 633
G N+
Sbjct: 431 GQNV 434
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +3
Query: 45 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 224
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 225 AERE 236
ERE
Sbjct: 296 EERE 299
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 100 bits (240), Expect = 2e-22
Identities = 56/132 (42%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Frame = +1
Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L
Sbjct: 250 FESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYL 309
Query: 448 AFTLGVKQLIVGVNKMDSTEHHTVSPDLRKSRRKYPHTF--KKIGYNPAAVAFVPISGWH 621
LG+ +++V VNK+D + S D + + F K +G+ + V FVPIS
Sbjct: 310 LRALGISEIVVSVNKLDLM---SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAIS 366
Query: 622 GDNMLEPSTKML 657
G N+++ + L
Sbjct: 367 GTNLIQKDSSDL 378
Score = 72.5 bits (170), Expect = 6e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +3
Query: 45 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 224
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 225 AER 233
ER
Sbjct: 235 EER 237
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 74.5 bits (175), Expect = 2e-14
Identities = 36/81 (44%), Positives = 53/81 (65%)
Frame = +1
Query: 265 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 444
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 445 LAFTLGVKQLIVGVNKMDSTE 507
LA +GVKQ++V +NK+D E
Sbjct: 163 LARQVGVKQIVVYINKVDMVE 183
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 39 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 125
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 286 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 465
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 466 KQLIVGVNKMD 498
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 128
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 283 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 378
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 128
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 283 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 378
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.020
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 438
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.76
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 57 NIVVIGHVDSGKSTTTGHLIYKCGGI 134
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.035
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 259 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 283 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.57
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 295 IIDAPGHRDFIKNMITGTSQADCAVLIV 378
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 29.5 bits (63), Expect = 0.57
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 282 LASFELPESISIVIPXHAQPLVCPIPKHI*RILYPFPGPPSRTSR 148
L F L + +++VIP PLV I H R+ P GP + +R
Sbjct: 62 LVKFALDKDVNLVIPGPELPLVEGIEGHFRRVGIPCFGPSALAAR 106
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.76
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 468
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 469 QLIVGVNKMD 498
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 57 NIVVIGHVDSGKSTTTGHLIYKCG 128
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 298 IDAPGHRDFIKNMITGTSQADCAVLIV 378
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/76 (21%), Positives = 33/76 (43%)
Frame = +3
Query: 39 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 218
K K ++++V+ VD K + +D+ E + +G GS++Y ++ K
Sbjct: 109 KSKYPVHVLVMKGVDEWKIERLRLDGAEIIMVDQIKTEDLIESGLSIGMGSYRYQYMFTK 168
Query: 219 LKAEREXVSQSICSLE 266
L + +C L+
Sbjct: 169 LSVFEQTQFDKVCILD 184
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 219 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 91
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 342 CDHVLDEISVSRSINDGNIVLASFELPESI 253
CDH+L IS SR G + FEL +I
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFELAVTI 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,181
Number of Sequences: 5004
Number of extensions: 68399
Number of successful extensions: 254
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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