Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0195.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    28   1.8  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    27   2.4  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   2.4  
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    27   4.1  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   5.4  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   5.4  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   7.2  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   9.5  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    25   9.5  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    25   9.5  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   9.5  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
            Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -2

Query: 442  IPSSIPFPDFKIFFKGFYYVINKFSTKVIILCIQQTNKS 326
            +P+ +P+  F +   G YY + KF+  V++L  ++++K+
Sbjct: 891  VPAQLPYISFNL--NGRYYPVRKFTGGVLMLIDRESDKA 927


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 66  RRRGHDDEEGYERLHRKRRRVSENQEIEDRLESL 167
           RR+ +D+ EGY+ L     +  E+ E E+ L+ L
Sbjct: 677 RRKENDNHEGYDLLPNSSTKGEESAENENELDDL 710


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +3

Query: 63  NRRRGHDDEEGYERLHRKRRRVSENQEIEDRLESLILRV 179
           NRRR   +E+   R ++   ++S+N+E    ++S++ ++
Sbjct: 22  NRRRQFQEEDQLRRNNKSSNKLSQNEEDAKNMDSVVQKL 60


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 27  SKICDTHSDFIMNRR-RGHDDEEGYERLHRKRRRVSENQEIE 149
           SK  +T  D I N   + H+DEE +++  R+R   +E   +E
Sbjct: 8   SKSGNTGKDLISNNEAKNHEDEETHQKKRRRRTTDAEATLLE 49


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 225 LILLGYSPNWNYFFRQLLKLRTLSDPRFLGFQIHD 121
           L L+G SPN N FF+  L    ++   F+G++I+D
Sbjct: 502 LFLIGGSPNANDFFQGYL-AACIALAFFIGYKIYD 535


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 212 PRRISKCTGSRFEYLRVKILRILTDCAIRM--PEKCTIYATLVGLLNAKNYNFGGEFVDY 385
           P+  +KC  + F  L  ++L+I+ + + R    EKC +  T       K Y+   EF+ +
Sbjct: 117 PKTAAKCLCNTF--LNARLLQIVNNPSARKFSNEKCLLQLT------RKGYSVVSEFLQH 168

Query: 386 IVKTFKENLKVGKWN 430
                +  L   KWN
Sbjct: 169 NGHNSQAELYASKWN 183


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -1

Query: 677 IARNLL*SQVSDLIEXPSXXTXPDQPKVMLTAPPNTNQSLLT*GTPSSLAESTNVSIKSA 498
           IA  L  ++V+   +  S     D PKV     P+ +Q   T  +   LA  T  S++SA
Sbjct: 277 IAETLTEAKVTLKCDPASLKVLKDMPKVSALVEPSVDQDYNTEFSDLILAIKTVPSLQSA 336

Query: 497 M 495
           M
Sbjct: 337 M 337


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 347 AKNYNFGGEFVDYIVKTFK 403
           AK  N  GEF+DYI+  +K
Sbjct: 272 AKTQNDLGEFLDYIISNYK 290


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 524 ILLMKMEYLTSEGIGLYLAVLSALPWVG 607
           ++   +++ T  GIGLYL ++   P  G
Sbjct: 181 VIPASLKFATGAGIGLYLTIIGLSPSAG 208


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 199 LELLFSPTLKIKDSKRSSISWFSDTRRLFRWRRS--YPSSSSCPL 71
           L+L     L+++  + S I ++  T+R+  WR+    P S   PL
Sbjct: 8   LDLHSYTQLEVERFRESLIQFYDKTKRILPWRKKECIPPSEDSPL 52


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 103 RSYPSSSSCPLRRFIIKSLCVSQIFDFSLYA 11
           R  P+S+  P+R   + S+  S++ DF+ YA
Sbjct: 57  RLTPNSAFVPVRDSAVASISTSKVQDFNSYA 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,902
Number of Sequences: 5004
Number of extensions: 61341
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)