Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0195.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   7.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   7.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 128 YTTPFPMEAFISFFIIMSSTTVHNKITVRITNL*LFSLC 12
           Y   FP E  I+F+II+   T+   + + +  + +  LC
Sbjct: 213 YKGDFPTETDITFYIIIRRKTLFYTVNLILPTVLISFLC 251


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 302 PEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTF 400
           P    ++ +L   LN KN+N   +   Y+++ F
Sbjct: 278 PSDYFLFRSLQNSLNGKNFNNDDDIKSYLIQFF 310


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 63  NRRRGHDDEEGYERLHRKRRRVSENQ 140
           +R R +  +  YE+LH ++ ++ E +
Sbjct: 7   DRNREYRKDRRYEKLHNEKEKLLEER 32


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 63  NRRRGHDDEEGYERLHRKRRRVSENQ 140
           +R R +  +  YE+LH ++ ++ E +
Sbjct: 7   DRNREYRKDRRYEKLHNEKEKLLEER 32


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 386  IVKTFKENLKVGKWNAARYCLRFI 457
            IV  F     VG W  ++Y LRF+
Sbjct: 1012 IVLAFVFRESVGAWAYSKYGLRFL 1035


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 285 IVLSACPRNVQSMQL 329
           +VLS CP N+  +Q+
Sbjct: 852 LVLSGCPSNMMELQV 866


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,398
Number of Sequences: 438
Number of extensions: 4466
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)