Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0096.Seq
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    28   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   4.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   4.7  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    26   6.1  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.1  

>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 279 YGFQNGGMVHSTGNIAGSXGXMVQXTVRTVPHGPVQGP 392
           Y   NG    S GNI+G+   M   T+ ++P  PV  P
Sbjct: 657 YTSHNGRHGGSNGNISGAKTPMTNYTINSMPSLPVFPP 694


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
 Frame = -2

Query: 304 TMPPFWKP*CPPCAPSRLDPDRAPRAPHGGHLLGPSPVG---ACRRVAGAPPYRSVPP 140
           T P    P  PP AP  L P   P  P G     P P     A    AG P    +PP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 93  TNAHTPYSTSLARRSTGGTLRYGGAPATRRHAP-TGLG 203
           TN  TP+ TS A  +T G+  +GG  A   +   TG G
Sbjct: 260 TNNATPFGTSNATNTTPGSGLFGGGSAFGSNTTNTGFG 297


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -2

Query: 301  MPPFWKP*CP-PCAPSRLDPDRAPRAPHGGHLLGPSPVGACRRVAGAPPYRS 149
            MPP   P  P   A S ++P    + PHGG  + P P     RV   PP  S
Sbjct: 978  MPPS-NPYTPIAVASSTVNPAHTYK-PHGGSQIVPPPKQPANRVVPLPPTAS 1027


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 170 GHTAACAHRAGTKQMT-AVGRTGRTVGIETRRCTRGTLWLP 289
           G  A  A +AG + +T A+      +GI    C  GT+W P
Sbjct: 141 GSPAYSAAKAGLENLTKALAVRYGPLGIRVNVCAPGTIWSP 181


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 35  FY*TLTPKPTLSECIF 82
           F+  L PKPT+S C+F
Sbjct: 263 FFLNLVPKPTVSFCVF 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,641
Number of Sequences: 5004
Number of extensions: 38825
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)