Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0096.Seq
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0458 + 3269069-3269081,3269113-3269741 31 0.69
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 31 0.91
07_03_1160 - 24430240-24431268 31 1.2
01_04_0012 - 15075505-15075636,15075719-15075784 31 1.2
04_03_1022 - 21778315-21779007 30 1.6
02_04_0379 - 22491069-22491503 30 2.1
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 29 2.8
07_03_0106 - 13460882-13462086,13463452-13463629 29 2.8
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 2.8
10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187... 29 3.7
01_01_0715 - 5542648-5543219,5543352-5543544 29 4.8
09_03_0206 + 13485420-13486439 28 8.5
09_02_0603 - 11150739-11150746,11150791-11151340 28 8.5
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 28 8.5
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282... 28 8.5
>06_01_0458 + 3269069-3269081,3269113-3269741
Length = 213
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 212 MTAVGRTGRTVGIETRRCTRGTLWLPKRGHGPQHGE 319
++AV RTG V + T+G + LP+R P+H E
Sbjct: 35 VSAVRRTGEQVAVRCHVRTKGLVMLPRRNTPPRHRE 70
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 31.1 bits (67), Expect = 0.91
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -2
Query: 286 KP*CPPCAPSRLDPDRAPRAPHGGHLLGPSPVGACRRVAGAPPYRSVP 143
+P P +P+ P PR HG LLG P G RV G P R P
Sbjct: 218 QPPSPSSSPATTSPAH-PRRAHGQVLLGSHPRGPHWRVQGHLPQRQGP 264
>07_03_1160 - 24430240-24431268
Length = 342
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 301 MPPFWKP*CPPCAPSRLDPDRAPRAPHGGHLLGPSPVGACRRVAGAPPYRSVPPVER 131
+PP KP PP P + PD+ P+ G L P+P + PP +PP+ +
Sbjct: 88 VPPMPKPDGPPIPPVQPCPDQPPQPKPDGPPL-PNPNQPPQPNPNGPPKPDMPPMPK 143
>01_04_0012 - 15075505-15075636,15075719-15075784
Length = 65
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 247 PDRAPRAPHGGHLLGPSPVGACRRVAGAPPYRSVPPVERL 128
P+R PR H H + + G RR PP PP+++L
Sbjct: 12 PERRPRHHHSRHPVATNRQGLPRRRPCRPPTADAPPLQQL 51
>04_03_1022 - 21778315-21779007
Length = 230
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Frame = -2
Query: 343 MXPXDPAMFPVLW-TMPPFWKP*CPPCAPSRLDPDRAPRAPHGGHLLGPSPVGACR--RV 173
+ P PA P W PP + P P P P PH H P+P +
Sbjct: 52 LLPPSPA--PQQWYDHPPNYHPPHTPAPAPAPGPYIPPHHPHHHHPPTPAPAPSTTPGGH 109
Query: 172 AGAPPYRSVPPV 137
G PPY PPV
Sbjct: 110 GGVPPYYPPPPV 121
>02_04_0379 - 22491069-22491503
Length = 144
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +2
Query: 140 RGYTAVRRGSGHTAAC---AHRAGTKQMTAVGRTGRTVGIETRRCTRGTLWLPKRGHGPQ 310
RG T RRG G A R G AVGR+ RT RR L + G +
Sbjct: 65 RGGTVARRGDGGVGAARGRVARRGAASGGAVGRSRRTGSGAKRRRRGADAHLTRERRGKR 124
Query: 311 HGEH 322
G H
Sbjct: 125 DGTH 128
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 322 MFPVLWTMPPFWKP*CPPCAPSRLDPDRAPRAP--HGGHLLGPSP 194
+FP+ WT PP PP DP P P +GG L P P
Sbjct: 33 LFPIEWTPPPSTASPSPPSPDFSSDPS-TPATPVDNGGPALLPPP 76
>07_03_0106 - 13460882-13462086,13463452-13463629
Length = 460
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 268 KGDTMASKTGAWSTARGTLPDXRGAWSKXRSARCHMGPY 384
KG +S+TG WST TL D +W + A G Y
Sbjct: 233 KGSVYSSETGVWSTP-ATLDDGYQSWEERWQAARSRGEY 270
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 322 MFPVLWTMPPFWKP*CPPCAPSRLDPDR--APRAPHGGHLLGPSP 194
+FP+ WT PP P PP DP AP AP G P+P
Sbjct: 42 LFPIEWTPPP--SPPPPPAPDFTSDPSTPPAPDAP-SGDFFPPAP 83
>10_08_0941 -
21717703-21718091,21718454-21718564,21718707-21718791,
21718885-21719106,21719804-21720292,21722206-21722322
Length = 470
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 209 AWSQPCGRMPPCGRSPSVPQCTPCGASC 126
AW C R+ C SP + TP GA C
Sbjct: 388 AWDPNCPRLVFCTESPHLYMWTPSGACC 415
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -2
Query: 283 P*CPPCAPSRLDPDRAPRAPHGGHLLGPSPVGACRRVAGAP 161
P P AP+ P P P GG+ PSP G A AP
Sbjct: 177 PPVPAPAPAG-SPPPPPPPPAGGNFTAPSPAGGMNFTAPAP 216
>09_03_0206 + 13485420-13486439
Length = 339
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +2
Query: 236 RTVGIETRRCTRGTLWLPKR---GHGPQHGEHC 325
RT + RR T T W P+R G GP+H C
Sbjct: 38 RTRALLPRRSTTTTTWTPRREPTGGGPRHRAGC 70
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = -2
Query: 298 PPFWKP*CPPCAPS--RLDPDRAPRAPHGGHLLGPSPVGACRRVAGAPPYRSVPPVERLA 125
PPF P PP + L P P G P P RV PP VPP+ +
Sbjct: 39 PPFGFPPPPPPGSTFVPLPQSGVPPPPPLGSFFVPPPQS---RVPPPPPQLGVPPLPQFG 95
Query: 124 NEVEYGV 104
+YG+
Sbjct: 96 MMPQYGL 102
>05_01_0595 +
5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 247 PDRAPRAPHGGHLLGPSPVGACRRVAGAPPYR 152
P RA P GG + +P A R+ AGAPP R
Sbjct: 48 PVRAEATPRGGGV--GAPAHAFRQAAGAPPCR 77
>05_01_0361 -
2824728-2826043,2826288-2826507,2827616-2827702,
2827726-2827980,2828704-2828733
Length = 635
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Frame = +2
Query: 116 HLVSKTLHRG------YTAVRRGSGHTAACAHRAGTKQMTAVGRTGRT 241
+L+ +T HR YT +R G GHT MT G G+T
Sbjct: 132 NLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGKT 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,110,915
Number of Sequences: 37544
Number of extensions: 362926
Number of successful extensions: 1229
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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