Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0096.Seq
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 29 2.8
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0) 29 4.9
SB_29988| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_22092| Best HMM Match : WD40 (HMM E-Value=7.2e-07) 29 4.9
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19) 28 8.6
>SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -3
Query: 255 VSIPTVRPVRPTAVICLVPALWAHAAVWPEPLRTAVYPL--WS 133
V+IP VRP+ T ++ +V LWA + +W A++PL WS
Sbjct: 109 VTIPMVRPITETQMLLVVTFLWAFSFLW------AIFPLVGWS 145
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -2
Query: 298 PPFWKP*CPPCAPSRLDPDRAPRAPHGGHLLGPSPVGACRRVAGAPPYRSVPP 140
PP + P PPCAP P AP P P+P A + AP + PP
Sbjct: 764 PPQFAPVPPPCAPIPPMPCSAPLPP------APAPFSAAPHLPPAPNISAEPP 810
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/58 (36%), Positives = 24/58 (41%)
Frame = -2
Query: 316 PVLWTMPPFWKP*CPPCAPSRLDPDRAPRAPHGGHLLGPSPVGACRRVAGAPPYRSVP 143
P P + P AP P AP G GP+P GA RVA PY +VP
Sbjct: 703 PASVAAPKAYPPPAAAAAPQGYPPSSAPT---GYQARGPAPPGAKPRVAA--PYGAVP 755
>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2195
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 318 SPCCGPCPRFGSHSVPLVHRLVSIPTVR 235
S CCG C FG+ V H +P +
Sbjct: 1560 STCCGNCSEFGTTKVNFTHSSADLPKAK 1587
>SB_29988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 318 SPCCGPCPRFGSHSVPLVHRLVSIPTVR 235
S CCG C FG+ V H +P +
Sbjct: 62 STCCGNCSEFGTTKVNFTHSSADLPKAK 89
>SB_22092| Best HMM Match : WD40 (HMM E-Value=7.2e-07)
Length = 338
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 81 LETFTNAHTPYSTSLARRSTGGTLRYGGAPATRRHAPTG 197
L + T TPY TSL G +LRY + R+ P G
Sbjct: 278 LPSITERITPYGTSLRYNPYGTSLRYNPYGTSLRYNPYG 316
>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = -2
Query: 274 PPCAPSRLDPDRAPRAPHGGHLLGPSPVGACRRVAGAPPYRSVPP 140
PP PS P +P PHGGH P P G G P + PP
Sbjct: 593 PPPHPSGGYPQPSP--PHGGHPHHPPPTG---YPGGYPGTHTAPP 632
>SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 368 HRADRXLDHAPLXSGNVPRAVDHAPVL 288
H D LD APL G A+ HAPV+
Sbjct: 302 HCVDERLDRAPLTFGRRKPAILHAPVV 328
>SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 982
Score = 27.9 bits (59), Expect = 8.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 278 LWLPKRGHGPQHGEHCR 328
+W H P+HG HCR
Sbjct: 859 IWTSMNNHEPKHGPHCR 875
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 166 APPYRSVPPVERLANEVEYGVCALVNVSKYTF 71
APP PP + + + E+G C +N+ F
Sbjct: 280 APPNTPAPPSGKFSCDFEHGTCGFINLKNDKF 311
>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
Length = 879
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 291 FGSHSVPLVHRLVSIPTVRPVRPTAVICLVPALWAHAAVWPEPLRTAVYPLW 136
+ S+S PL+H ++ V +V L+ LW W EPL + W
Sbjct: 702 WASNSQPLLHH-AALDGVNDANRDSVNILIHDLWKLNVDWDEPLNGEIRTRW 752
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,524,235
Number of Sequences: 59808
Number of extensions: 356783
Number of successful extensions: 1099
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -