Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0096.Seq
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56890.1 68418.m07099 protein kinase family protein contains ...    32   0.33 
At2g06904.1 68415.m00778 hypothetical protein                          31   0.57 
At2g09840.1 68415.m01018 hypothetical protein                          29   3.1  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   4.0  
At2g31370.3 68415.m03832 bZIP transcription factor (POSF21) iden...    29   4.0  
At2g31370.2 68415.m03834 bZIP transcription factor (POSF21) iden...    29   4.0  
At2g31370.1 68415.m03833 bZIP transcription factor (POSF21) iden...    29   4.0  
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    29   4.0  
At5g07310.1 68418.m00835 AP2 domain-containing transcription fac...    28   7.1  
At2g05260.1 68415.m00554 lipase class 3 family protein contains ...    28   7.1  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    27   9.3  

>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
 Frame = -2

Query: 376 PCGTVRTVFWTMXPXDPAMFPVL---WTMPPFWKP*CPPCAPSRLDPDRAPRAPHGGHLL 206
           P G V  VF    P  PA  PV       PP  +P  P  +P R  P  AP+ P     +
Sbjct: 92  PAG-VPVVFVPNAPA-PATIPVKDLPVASPPVLQPITPIASPPRFIPGDAPKEPPFSGRV 149

Query: 205 GPSPVGACRRVAGAPPYRSV--PP 140
            P+PV +   V+  PP  SV  PP
Sbjct: 150 TPAPVSS--PVSDIPPIPSVALPP 171


>At2g06904.1 68415.m00778 hypothetical protein
          Length = 217

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 407 PXXALXPLYGPMWHRADRXLDHAPLXSGNVPRAVDHAP 294
           P  AL  LY P+ + +D   D  P  S  VP AVDH+P
Sbjct: 99  PSFALS-LYSPISYESDPKEDQDPPISPYVPEAVDHSP 135


>At2g09840.1 68415.m01018 hypothetical protein
          Length = 163

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 407 PXXALXPLYGPMWHRADRXLDHAPLXSGNVPRAVDHAP 294
           P  AL P Y  + + +D   D  P  S  VP A+DH+P
Sbjct: 46  PSFALNP-YSSISYESDPDEDEDPPVSPYVPEAIDHSP 82


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/66 (31%), Positives = 24/66 (36%)
 Frame = -2

Query: 337 PXDPAMFPVLWTMPPFWKP*CPPCAPSRLDPDRAPRAPHGGHLLGPSPVGACRRVAGAPP 158
           P  PA  PV  T PP      PP   S   P  +P  P   +   P P  +       PP
Sbjct: 524 PPSPAPTPVYCTRPP------PPPPHSPPPPQFSPPPPEPYYYSSPPPPHSSPPPHSPPP 577

Query: 157 YRSVPP 140
             S PP
Sbjct: 578 PHSPPP 583


>At2g31370.3 68415.m03832 bZIP transcription factor (POSF21)
           identical to GB:Q04088
          Length = 279

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 253 LDPDRAPRAPHGGHLLGPSPVGACRRVAGAPPYRSVPPVERLANEV 116
           +D +++P  P GG L  PSP G C   + A P        R+++++
Sbjct: 1   MDKEKSPAPPCGG-LPPPSPSGRCSAFSEAGPIGHGSDANRMSHDI 45


>At2g31370.2 68415.m03834 bZIP transcription factor (POSF21)
           identical to GB:Q04088
          Length = 398

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 253 LDPDRAPRAPHGGHLLGPSPVGACRRVAGAPPYRSVPPVERLANEV 116
           +D +++P  P GG L  PSP G C   + A P        R+++++
Sbjct: 1   MDKEKSPAPPCGG-LPPPSPSGRCSAFSEAGPIGHGSDANRMSHDI 45


>At2g31370.1 68415.m03833 bZIP transcription factor (POSF21)
           identical to GB:Q04088
          Length = 398

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 253 LDPDRAPRAPHGGHLLGPSPVGACRRVAGAPPYRSVPPVERLANEV 116
           +D +++P  P GG L  PSP G C   + A P        R+++++
Sbjct: 1   MDKEKSPAPPCGG-LPPPSPSGRCSAFSEAGPIGHGSDANRMSHDI 45


>At1g80070.1 68414.m09373 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = -2

Query: 244 DRAPRAPHG--GHLLGPSPVGACRRVAGAPPYRSVPPVERLANEVE 113
           D  P AP G  G ++ P P       A  PP    PPVE    E E
Sbjct: 6   DGMPLAPPGTGGSMMPPPPAAHPSYTALPPPSNPTPPVEPTPEEAE 51


>At5g07310.1 68418.m00835 AP2 domain-containing transcription
           factor, putative AP2 domain containing
           proteins/transcription factors
          Length = 263

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 57  NQHFQNVYLETFTNAHTPYSTSLARRSTGGTL 152
           NQ++ N YL    N++   S SLA   TGG++
Sbjct: 189 NQYYYNQYLHQGGNSNDALSYSLAGGETGGSM 220


>At2g05260.1 68415.m00554 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 358

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = -2

Query: 163 PPYRSVPPVERLANE-VEYGV 104
           PPY S PP+ER+ANE V +G+
Sbjct: 188 PPYVS-PPIERIANERVRHGI 207


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 212 FAWSQPCGRMPPCGRSPSVPQCTP 141
           F  ++PCGR   CGR     +C P
Sbjct: 560 FVCAKPCGRKKNCGRHRCSERCCP 583


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,039,836
Number of Sequences: 28952
Number of extensions: 242486
Number of successful extensions: 565
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)