SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0068.Seq
         (978 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q94522 Cluster: Succinyl-CoA ligase [GDP-forming] subun...    60   1e-07
UniRef50_A6RFY2 Cluster: Putative uncharacterized protein; n=1; ...    44   0.006
UniRef50_P53597 Cluster: Succinyl-CoA ligase [GDP-forming] subun...    44   0.006
UniRef50_UPI000023DDE4 Cluster: hypothetical protein FG07898.1; ...    40   0.073
UniRef50_Q9AKE1 Cluster: Succinyl-CoA ligase [ADP-forming] subun...    40   0.097
UniRef50_P45102 Cluster: Succinyl-CoA ligase [ADP-forming] subun...    40   0.097
UniRef50_A2BKT0 Cluster: Aldehyde ferredoxin oxidoreductase; n=1...    38   0.39 
UniRef50_A5ATZ1 Cluster: Putative uncharacterized protein; n=2; ...    38   0.52 
UniRef50_O26663 Cluster: Succinyl-CoA ligase [ADP-forming] subun...    36   1.6  
UniRef50_A6DYT9 Cluster: Succinyl-CoA synthetase, alpha subunit;...    34   4.8  
UniRef50_Q2V0P6 Cluster: Succinyl-CoA ligase [ADP-forming] subun...    33   8.4  

>UniRef50_Q94522 Cluster: Succinyl-CoA ligase [GDP-forming] subunit
           alpha, mitochondrial precursor; n=81; cellular
           organisms|Rep: Succinyl-CoA ligase [GDP-forming] subunit
           alpha, mitochondrial precursor - Drosophila melanogaster
           (Fruit fly)
          Length = 328

 Score = 59.7 bits (138), Expect = 1e-07
 Identities = 34/102 (33%), Positives = 47/102 (46%)
 Frame = +3

Query: 270 CSGFHWKAGYLPQXTSP*LXVLKLLERVSPKKAGTEHLGXPGFGXXXXXXXXXXXXXXXI 449
           C GF  K G      +      KL+  +SPKK GT+HLG P F                I
Sbjct: 42  CQGFTGKQGTFHSQQALEYGT-KLVGGISPKKGGTQHLGLPVFASVAEAKKATDPHATVI 100

Query: 450 DVPPPGXAAGXVXXXXAXMPSVXALQKVCHRHXXLRVKHALL 575
            VPPPG AA  +    A +P +  + +   +H  ++VKHAL+
Sbjct: 101 YVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALI 142



 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 35/85 (41%), Positives = 40/85 (47%)
 Frame = +1

Query: 589 SKLVGPNCPGIIAPEECXNWXXASWQSXXXXXHXALVSRSGXIEPNEACHXTTYYWA*AK 768
           S+LVGPNCPGIIAPE+C                  +VSRSG +   EA H TT       
Sbjct: 147 SRLVGPNCPGIIAPEQCKIGIMPG--HIHKRGKIGVVSRSGTL-TYEAVHQTTEVGLGQT 203

Query: 769 LLWCRXWRGXPSTGTRLSLTCXEVF 843
           L  C    G P  GT   + C EVF
Sbjct: 204 L--CVGIGGDPFNGTDF-IDCLEVF 225



 Score = 41.5 bits (93), Expect = 0.032
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           ++V  QGFTGKQGTFHS QAL+Y
Sbjct: 38  SRVICQGFTGKQGTFHSQQALEY 60


>UniRef50_A6RFY2 Cluster: Putative uncharacterized protein; n=1;
           Ajellomyces capsulatus NAm1|Rep: Putative
           uncharacterized protein - Ajellomyces capsulatus NAm1
          Length = 138

 Score = 44.0 bits (99), Expect = 0.006
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           TKV  QGFTGKQGTFH+ QA+DY
Sbjct: 43  TKVIYQGFTGKQGTFHAQQAIDY 65


>UniRef50_P53597 Cluster: Succinyl-CoA ligase [GDP-forming] subunit
           alpha, mitochondrial precursor; n=313; cellular
           organisms|Rep: Succinyl-CoA ligase [GDP-forming] subunit
           alpha, mitochondrial precursor - Homo sapiens (Human)
          Length = 333

 Score = 44.0 bits (99), Expect = 0.006
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           TK+  QGFTGKQGTFHS QAL+Y
Sbjct: 43  TKIICQGFTGKQGTFHSQQALEY 65



 Score = 42.7 bits (96), Expect = 0.014
 Identities = 32/105 (30%), Positives = 40/105 (38%)
 Frame = +3

Query: 261 KSXCSGFHWKAGYLPQXTSP*LXVLKLLERVSPKKAGTEHLGXPGFGXXXXXXXXXXXXX 440
           K  C GF  K G      +      KL+   +P K G  HLG P F              
Sbjct: 44  KIICQGFTGKQGTFHSQQALEYGT-KLVGGTTPGKGGQTHLGLPVFNTVKEAKEQTGATA 102

Query: 441 XXIDVPPPGXAAGXVXXXXAXMPSVXALQKVCHRHXXLRVKHALL 575
             I VPPP  AA       A +P V  + +   +   +RVKH LL
Sbjct: 103 SVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLL 147



 Score = 42.7 bits (96), Expect = 0.014
 Identities = 30/87 (34%), Positives = 39/87 (44%)
 Frame = +1

Query: 583 DXSKLVGPNCPGIIAPEECXNWXXASWQSXXXXXHXALVSRSGXIEPNEACHXTTYYWA* 762
           + ++L+GPNCPG+I P EC                  +VSRSG +   EA H TT     
Sbjct: 150 EKTRLIGPNCPGVINPGECKIGIMPG--HIHKKGRIGIVSRSGTL-TYEAVHQTTQVGLG 206

Query: 763 AKLLWCRXWRGXPSTGTRLSLTCXEVF 843
             L  C    G P  GT   + C E+F
Sbjct: 207 QSL--CVGIGGDPFNGTDF-IDCLEIF 230


>UniRef50_UPI000023DDE4 Cluster: hypothetical protein FG07898.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG07898.1 - Gibberella zeae PH-1
          Length = 320

 Score = 40.3 bits (90), Expect = 0.073
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +1

Query: 589 SKLVGPNCPGIIAPEEC 639
           S+LVGPNCPGIIAPE+C
Sbjct: 107 SRLVGPNCPGIIAPEQC 123


>UniRef50_Q9AKE1 Cluster: Succinyl-CoA ligase [ADP-forming] subunit
           alpha; n=29; cellular organisms|Rep: Succinyl-CoA ligase
           [ADP-forming] subunit alpha - Rickettsia typhi
          Length = 292

 Score = 39.9 bits (89), Expect = 0.097
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           TKV  QGFTG QGTFHS QA+ Y
Sbjct: 9   TKVICQGFTGSQGTFHSEQAIAY 31



 Score = 35.1 bits (77), Expect = 2.8
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 589 SKLVGPNCPGIIAPEEC 639
           ++L+GPNCPG+I P EC
Sbjct: 117 TRLIGPNCPGVITPGEC 133


>UniRef50_P45102 Cluster: Succinyl-CoA ligase [ADP-forming] subunit
           alpha; n=125; Bacteria|Rep: Succinyl-CoA ligase
           [ADP-forming] subunit alpha - Haemophilus influenzae
          Length = 293

 Score = 39.9 bits (89), Expect = 0.097
 Identities = 18/23 (78%), Positives = 18/23 (78%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           TKV  QGFTG QGTFHS QAL Y
Sbjct: 9   TKVICQGFTGGQGTFHSEQALAY 31



 Score = 34.7 bits (76), Expect = 3.6
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 595 LVGPNCPGIIAPEEC 639
           ++GPNCPG+I P+EC
Sbjct: 119 MIGPNCPGVITPDEC 133


>UniRef50_A2BKT0 Cluster: Aldehyde ferredoxin oxidoreductase; n=1;
           Hyperthermus butylicus DSM 5456|Rep: Aldehyde ferredoxin
           oxidoreductase - Hyperthermus butylicus (strain DSM 5456
           / JCM 9403)
          Length = 631

 Score = 37.9 bits (84), Expect = 0.39
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 264 SXCSGFHWKAGYLPQXTSP*LXVLKLLERVSPKKAGTEHLG 386
           S C G+HW+  +LPQ  +  L   ++L+R +PK    EH G
Sbjct: 253 SMCPGWHWRRPWLPQEEAEKLSCSEVLKREAPKSLYREHAG 293


>UniRef50_A5ATZ1 Cluster: Putative uncharacterized protein; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           - Vitis vinifera (Grape)
          Length = 468

 Score = 37.5 bits (83), Expect = 0.52
 Identities = 22/70 (31%), Positives = 30/70 (42%)
 Frame = +3

Query: 336 KLLERVSPKKAGTEHLGXPGFGXXXXXXXXXXXXXXXIDVPPPGXAAGXVXXXXAXMPSV 515
           K++  V+PKK G EHLG P F                I VPPP  AA  +    A +  V
Sbjct: 66  KMVGGVTPKKGGMEHLGLPIFNTVAEAKAETRANASVIYVPPPFAAAAIMEAVEAELDLV 125

Query: 516 XALQKVCHRH 545
             + +   +H
Sbjct: 126 VCITEGIPQH 135



 Score = 36.7 bits (81), Expect = 0.90
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           T+V  QG TGK GTFH+ QA++Y
Sbjct: 41  TRVICQGITGKNGTFHTEQAIEY 63



 Score = 35.1 bits (77), Expect = 2.8
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 589 SKLVGPNCPGIIAPEEC 639
           ++L+GPNCPGII P EC
Sbjct: 351 TRLIGPNCPGIIKPGEC 367


>UniRef50_O26663 Cluster: Succinyl-CoA ligase [ADP-forming] subunit
           alpha; n=13; cellular organisms|Rep: Succinyl-CoA ligase
           [ADP-forming] subunit alpha - Methanobacterium
           thermoautotrophicum
          Length = 293

 Score = 35.9 bits (79), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           T+  VQG TGKQG+FH+ Q L+Y
Sbjct: 13  TRCLVQGITGKQGSFHTRQMLEY 35


>UniRef50_A6DYT9 Cluster: Succinyl-CoA synthetase, alpha subunit;
           n=2; Roseovarius|Rep: Succinyl-CoA synthetase, alpha
           subunit - Roseovarius sp. TM1035
          Length = 299

 Score = 34.3 bits (75), Expect = 4.8
 Identities = 28/112 (25%), Positives = 40/112 (35%)
 Frame = +3

Query: 351 VSPKKAGTEHLGXPGFGXXXXXXXXXXXXXXXIDVPPPGXAAGXVXXXXAXMPSVXALQK 530
           V P K G  HLG P F                + VP P      +    A +  V  + +
Sbjct: 39  VRPGKGGARHLGLPLFNTVREAVEATQANASLVIVPAPQAGPAMIEAIEAGVSVVVCVTE 98

Query: 531 VCHRHXXLRVKHALLGXRXV*TGWS*LSWXHCSRGVXQLXSCQLAVXXTXXA 686
              +H   RVK AL G   +  G +       S+G+     C++ V  T  A
Sbjct: 99  RVPQHDMSRVKQALAGTDTILIGPN-------SQGILTPGQCKIGVMPTVNA 143


>UniRef50_Q2V0P6 Cluster: Succinyl-CoA ligase [ADP-forming] subunit
           alpha; n=10; cellular organisms|Rep: Succinyl-CoA ligase
           [ADP-forming] subunit alpha - Pelotomaculum
           thermopropionicum
          Length = 290

 Score = 33.5 bits (73), Expect = 8.4
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           T+V VQG TG QG FH+ Q L Y
Sbjct: 9   TQVLVQGITGNQGVFHTRQMLAY 31


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,876,473
Number of Sequences: 1657284
Number of extensions: 13415595
Number of successful extensions: 21973
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21909
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 91448297248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -