Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0068.Seq
         (978 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    46   1e-05
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   2.3  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    27   4.0  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    27   4.0  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 26/79 (32%), Positives = 35/79 (44%)
 Frame = +3

Query: 336 KLLERVSPKKAGTEHLGXPGFGXXXXXXXXXXXXXXXIDVPPPGXAAGXVXXXXAXMPSV 515
           K++   +PKKAGT HLG P FG               + VPPP  A        A +P +
Sbjct: 66  KVVGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLI 125

Query: 516 XALQKVCHRHXXLRVKHAL 572
            A+ +   +H  LRV   L
Sbjct: 126 VAITEGIPQHDMLRVSDIL 144



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           TKV  QGFTGKQGTFH+  A+DY
Sbjct: 41  TKVIFQGFTGKQGTFHAQHAMDY 63



 Score = 36.3 bits (80), Expect = 0.007
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +1

Query: 589 SKLVGPNCPGIIAPEECXNWXXASWQSXXXXXHXALVSRSGXIEPNEACHXTT 747
           S+LVGPNCPGII P +C      S           +VSRSG +   EA + TT
Sbjct: 150 SRLVGPNCPGIIRPGQCKIGIMPS--HIHKPGCIGIVSRSGTL-TYEAVNQTT 199


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 484 TXPAAXPGGGTSITEALAPVPAFA 413
           T  AA PGG  S  EA AP+P  A
Sbjct: 526 TTSAAVPGGKKSAIEAAAPIPTSA 549


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 129 NSTMAMPVPGSF*VQRWTKDSAMYDLHPATLMLKPE 236
           NST    +PGS   Q+ +  S ++ LHP  + L  E
Sbjct: 139 NSTSVEDLPGSNRTQQTSSHSLLHPLHPIDVSLSKE 174


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 777 PQKFGLSPVISSLMTGFIGFNXPRTGYQRRM 685
           PQ FG    + SL   F  FN P   YQ  M
Sbjct: 321 PQLFGDRAEVESLRENFESFNQPLPSYQNSM 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,961
Number of Sequences: 5004
Number of extensions: 50116
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)