Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0068.Seq
         (978 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...    45   8e-05
10_01_0073 - 955746-955758,955811-956832                               32   0.60 
10_01_0072 - 918323-918335,918388-919409                               32   0.60 
01_06_0658 - 30942890-30943054,30943159-30943266,30943448-309435...    29   5.6  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score = 45.2 bits (102), Expect = 8e-05
 Identities = 26/74 (35%), Positives = 34/74 (45%)
 Frame = +3

Query: 351 VSPKKAGTEHLGXPGFGXXXXXXXXXXXXXXXIDVPPPGXAAGXVXXXXAXMPSVXALQK 530
           V+PKK GTEHLG P F                I VPPP  AA  +    A +  V  + +
Sbjct: 73  VTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITE 132

Query: 531 VCHRHXXLRVKHAL 572
              +H  ++VK AL
Sbjct: 133 GIPQHDMVKVKAAL 146



 Score = 36.7 bits (81), Expect = 0.028
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 259 TKVXVQGFTGKQGTFHSXQALDY 327
           T+V  QG TGK GTFH+ QA++Y
Sbjct: 43  TRVICQGITGKNGTFHTEQAIEY 65



 Score = 36.7 bits (81), Expect = 0.028
 Identities = 29/85 (34%), Positives = 36/85 (42%)
 Frame = +1

Query: 589 SKLVGPNCPGIIAPEECXNWXXASWQSXXXXXHXALVSRSGXIEPNEACHXTTYYWA*AK 768
           ++L+GPNCPGII P EC       +          +VSRSG +   EA   TT       
Sbjct: 152 TRLIGPNCPGIIKPGECKIGIMPGY--IHKPGRVGIVSRSGTL-TYEAVFQTTAVGLGQS 208

Query: 769 LLWCRXWRGXPSTGTRLSLTCXEVF 843
              C    G P  GT   + C E F
Sbjct: 209 T--CVGIGGDPFNGTNF-VDCLEKF 230


>10_01_0073 - 955746-955758,955811-956832
          Length = 344

 Score = 32.3 bits (70), Expect = 0.60
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 577 DXDXSKLVGPNCPGIIAPEECXNWXXASWQS 669
           D D S++  P C    AP++C  W    WQS
Sbjct: 242 DLDLSRIPTPICSCTGAPQQCYRWGAGGWQS 272


>10_01_0072 - 918323-918335,918388-919409
          Length = 344

 Score = 32.3 bits (70), Expect = 0.60
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 577 DXDXSKLVGPNCPGIIAPEECXNWXXASWQS 669
           D D S++  P C    AP++C  W    WQS
Sbjct: 242 DLDLSRIPTPICSCTGAPQQCYRWGAGGWQS 272


>01_06_0658 -
           30942890-30943054,30943159-30943266,30943448-30943598,
           30943683-30943780,30943869-30944020,30944298-30944403,
           30944499-30944588,30944668-30944813,30945396-30945695,
           30945953-30946038,30947260-30947996
          Length = 712

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 484 TXPAAXPGGGTSITEALAPVPAFASLTVPNPGLPRCSVP 368
           T P+A  G   + T A     A+A L VP PG P    P
Sbjct: 114 TVPSAAAGATANATAADVAAAAYAGLAVPPPGGPALRPP 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,384,290
Number of Sequences: 37544
Number of extensions: 397023
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2846681820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)