Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0068.Seq
         (978 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   5.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   9.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   9.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   9.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 499 AXIXXTXPAAXPGGGTSITEALAPVPAFASLTVPNPG 389
           A I  T P+  PGGG+S     +P   F+S++  + G
Sbjct: 74  AAITSTSPS-YPGGGSSSPSPSSPSSFFSSVSPTSLG 109


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 779 VGIGGXSLQPEPDF 820
           VG GG  LQP PD+
Sbjct: 97  VGDGGPLLQPYPDW 110


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 779 VGIGGXSLQPEPDF 820
           VG GG  LQP PD+
Sbjct: 97  VGDGGPLLQPYPDW 110


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 779 VGIGGXSLQPEPDF 820
           VG GG  LQP PD+
Sbjct: 97  VGDGGPLLQPYPDW 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,118
Number of Sequences: 438
Number of extensions: 4466
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32290713
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)