Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0067.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    29   0.77 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   3.1  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   9.5  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   9.5  

>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 255 WDRQPEXAXAPSTGQVYIXDRRRQXLADTSYVPQQENEVY 374
           WD   E A      +VY+ D R + + DT     Q N +Y
Sbjct: 45  WDAAREKALKVGAKKVYVEDLREEFINDTVIPAAQANAIY 84


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 499 GRFGSLGNRYQSGGVQFDLXSGVSQFGR 416
           G FG+  N   +GG  F + SG   FG+
Sbjct: 66  GLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 561 SSLGAPQTSSTPGSGKFKNRQAASVALATGT 469
           S++     SSTPG+G F + Q  +    TGT
Sbjct: 525 SNMFGSANSSTPGTGLFGSTQTNNATSNTGT 555


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = +1

Query: 286 LQRARCTXLIVAARXLPIPATYRNKKTKSITLSNQRPDLQPXXSD--RTG*PHXXDRIVL 459
           L++ +   +IV    +  P T ++      T     P L+P   +  RT   H    I +
Sbjct: 323 LKKCKIDGVIVGNTTVQRPKTLKSTSHVEETGGLSGPPLKPIALNTLRTLRKHLSSDIPI 382

Query: 460 HHFGTGCQGYRSGLPVLELTRAGST 534
                GC G  SG   +E  RAG+T
Sbjct: 383 ----IGCGGISSGKDAIEYARAGAT 403


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 564 PSSLGAPQTSSTPGSGKFKNRQAASVAL 481
           P+S   PQ S   G+ +F +R+ AS A+
Sbjct: 95  PASSELPQVSRLNGASQFPSREPASTAI 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,488
Number of Sequences: 5004
Number of extensions: 36905
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)