Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0067.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0225 - 19501643-19501903,19503974-19504477                       32   0.61 
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    29   5.7  
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362...    28   7.5  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    28   7.5  

>01_05_0225 - 19501643-19501903,19503974-19504477
          Length = 254

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 404 SPXQATELADPTXKIELYSTTLVPVAKATEAACRFLNLPEPGV 532
           +P +AT  A PT  + L  +  VP+ +A   +C F ++   GV
Sbjct: 54  TPPRATAFAIPTVDLSLPRSATVPLVRAAATSCGFFHVTSHGV 96


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 317  SPPXPCRYQLRTATRKRSLLPSATRDPIFSPXQATE 424
            SPP P RY     T K+S+ P  +RD +F   +A +
Sbjct: 2131 SPPLPTRYPSAEDTSKQSIRPQDSRD-VFREQKAVD 2165


>07_03_0562 +
           19535801-19535865,19535972-19536017,19536125-19536223,
           19536588-19536674,19537545-19537613,19537702-19538710,
           19539217-19539365,19539453-19540487,19540488-19541003
          Length = 1024

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 425 LADPTXKIELYSTTLVPVAKATEAACRFLNLPEPG-VLEV*GAPREEGXRXXEEQAKRLL 601
           L  P  K  L+  T  P  ++TEA     N   PG V +   AP E+  +     + R L
Sbjct: 627 LESPEIKPRLFGVTAEPQQRSTEAPSLHENHRAPGSVAKTKRAPSEQTRKGSSSSSSRPL 686

Query: 602 RKTGEK 619
           +K  ++
Sbjct: 687 QKQPQR 692


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
 Frame = +3

Query: 261 RQPEXAXAPSTGQVYIXDRRRQXLADTSYVPQQENEVYYPQ-QPETRSSAPXKRPNWLTP 437
           R  E A  P T   Y            +Y PQ + E Y PQ Q ET    P  +P    P
Sbjct: 213 RDVEHAAYPPTSTTYPPQPYPPQPQGQTYPPQPQGETYQPQPQRETYPPQPQVQP--YPP 270

Query: 438 LXRSNCTPPLWYRLPRLPKRPAGS*TY 518
             +    PP     P  P +P G  TY
Sbjct: 271 KPQGQPYPPQPQGQP-YPPQPYGQ-TY 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,946,044
Number of Sequences: 37544
Number of extensions: 339012
Number of successful extensions: 923
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)