Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0067.Seq
         (797 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50839-1|AAC35207.1| 1123|Homo sapiens g16 protein protein.            33   0.90 
BC046643-1|AAH46643.1|  601|Homo sapiens RBM6 protein protein.         33   0.90 
AF091264-1|AAD04160.1| 1123|Homo sapiens RNA binding motif prote...    33   0.90 
AF069517-1|AAC21578.1| 1123|Homo sapiens RNA binding protein DEF...    33   0.90 
AF042857-1|AAC05826.1| 1123|Homo sapiens lung cancer antigen NY-...    33   0.90 
AK125488-1|BAC86180.1|  181|Homo sapiens protein ( Homo sapiens ...    31   6.4  

>U50839-1|AAC35207.1| 1123|Homo sapiens g16 protein protein.
          Length = 1123

 Score = 33.5 bits (73), Expect = 0.90
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
 Frame = +3

Query: 213 YYNPRTVGGGMAGFWDRQPEXAXAPSTGQVYIXDRRR----QXLADTSYVPQQENEVYYP 380
           Y+  R  GGG    W          S+   YI D         LA T Y P  + EVY P
Sbjct: 761 YFRDRR-GGGRNSDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVP 819

Query: 381 QQP 389
           Q P
Sbjct: 820 QDP 822


>BC046643-1|AAH46643.1|  601|Homo sapiens RBM6 protein protein.
          Length = 601

 Score = 33.5 bits (73), Expect = 0.90
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
 Frame = +3

Query: 213 YYNPRTVGGGMAGFWDRQPEXAXAPSTGQVYIXDRRR----QXLADTSYVPQQENEVYYP 380
           Y+  R  GGG    W          S+   YI D         LA T Y P  + EVY P
Sbjct: 239 YFRDRR-GGGRNSDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVP 297

Query: 381 QQP 389
           Q P
Sbjct: 298 QDP 300


>AF091264-1|AAD04160.1| 1123|Homo sapiens RNA binding motif protein
           6 protein.
          Length = 1123

 Score = 33.5 bits (73), Expect = 0.90
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
 Frame = +3

Query: 213 YYNPRTVGGGMAGFWDRQPEXAXAPSTGQVYIXDRRR----QXLADTSYVPQQENEVYYP 380
           Y+  R  GGG    W          S+   YI D         LA T Y P  + EVY P
Sbjct: 761 YFRDRR-GGGRNSDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVP 819

Query: 381 QQP 389
           Q P
Sbjct: 820 QDP 822


>AF069517-1|AAC21578.1| 1123|Homo sapiens RNA binding protein DEF-3
           protein.
          Length = 1123

 Score = 33.5 bits (73), Expect = 0.90
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
 Frame = +3

Query: 213 YYNPRTVGGGMAGFWDRQPEXAXAPSTGQVYIXDRRR----QXLADTSYVPQQENEVYYP 380
           Y+  R  GGG    W          S+   YI D         LA T Y P  + EVY P
Sbjct: 761 YFRDRR-GGGRNSDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVP 819

Query: 381 QQP 389
           Q P
Sbjct: 820 QDP 822


>AF042857-1|AAC05826.1| 1123|Homo sapiens lung cancer antigen
           NY-LU-12 variant A protein.
          Length = 1123

 Score = 33.5 bits (73), Expect = 0.90
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
 Frame = +3

Query: 213 YYNPRTVGGGMAGFWDRQPEXAXAPSTGQVYIXDRRR----QXLADTSYVPQQENEVYYP 380
           Y+  R  GGG    W          S+   YI D         LA T Y P  + EVY P
Sbjct: 761 YFRDRR-GGGRNSDWSSDTNRQGQQSSSDCYIYDSASGYYYDPLAGTYYDPNTQQEVYVP 819

Query: 381 QQP 389
           Q P
Sbjct: 820 QDP 822


>AK125488-1|BAC86180.1|  181|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43499 fis, clone PEBLM2002749. ).
          Length = 181

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 29/106 (27%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
 Frame = +3

Query: 267 PEXAXAPSTGQVYIXDRRRQXLADTSYVPQQENEVYYPQQPETRSSAPXKR---PNW-LT 434
           P  + APS+G      R    L  TS           P Q ++    P  R   P W   
Sbjct: 44  PPTSTAPSSGPPRALGR---FLCQTSPATHSSGSRAPPPQQQSSRDLPQGRSPAPGWKAA 100

Query: 435 PLXRSNCTPPLWYRLPRLPKRPAGS*TYQSREYSKFEEPQGKKAXA 572
            L R           PRLP RP GS      + S    P G++  A
Sbjct: 101 ELWRRGTQRTAGRACPRLPARPEGS-ARSKNQKSSMRSPAGRRGVA 145


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,965,567
Number of Sequences: 237096
Number of extensions: 1846183
Number of successful extensions: 8185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8176
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)