Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0067.Seq
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    28   8.9  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    28   8.9  

>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 351 PQQENEVYYPQQPETRSSAPXKRPNWLTPLXRSNCTPPLWYRL-PRLPKRP 500
           P      Y PQQP + +SAP   PN  T L      P   Y   PR+P  P
Sbjct: 167 PASSRRPYPPQQPPS-TSAPHSSPNNRTSLYNPQPPPKTGYPTNPRVPYNP 216


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +2

Query: 305 HX*SSPPXPCRYQLRTATRKRSLLPSATRDPIFSPXQATELADPTXKIELYSTTLVP 475
           H  S    P + + R  T K+    SAT      P     +A PT  +E  STT  P
Sbjct: 561 HTKSKQQPPSKIETRFNTYKKKSESSATDTSNTPPVDTVNVALPTPVVESSSTTAAP 617


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +2

Query: 305 HX*SSPPXPCRYQLRTATRKRSLLPSATRDPIFSPXQATELADPTXKIELYSTTLVP 475
           H  S    P + + R  T K+    SAT      P     +A PT  +E  STT  P
Sbjct: 565 HTKSKQQPPSKIETRFNTYKKKSESSATDTSNTPPVDTVNVALPTPVVESSSTTAAP 621


>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
           protein 5, isoformb protein.
          Length = 1306

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 314 SSPPXPCRYQLRTATRKRSLLPSATRDPIFSPXQATELADPTXKIE 451
           + PP P  YQL    R+ + +P+   +P+       ++ D + + E
Sbjct: 63  ADPPNPSTYQLNVEAREVNTVPTRRSEPVTITIHILDINDNSPQFE 108


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 314 SSPPXPCRYQLRTATRKRSLLPSATRDPIFSPXQATELADPTXKIE 451
           + PP P  YQL    R+ + +P+   +P+       ++ D + + E
Sbjct: 63  ADPPNPSTYQLNVEAREVNTVPTRRSEPVTITIHILDINDNSPQFE 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,856
Number of Sequences: 27780
Number of extensions: 243129
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)