Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0058.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   3.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.7  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 261 HSYFGDVNTQIPMXPSAADAQEYTQI 184
           +SY G++ T +PM   +A   + T I
Sbjct: 45  NSYIGELATLVPMVARSAKRMDKTSI 70


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 396 FIRAKYEQXKYIAKEWVP 449
           F++    + KY+  EWVP
Sbjct: 80  FVQIDPHRWKYVNGEWVP 97


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = -3

Query: 450 GAPTPSQCISXVRIWRV*TXPRTCRFVDV*TSLVSSPRTRP--GRXCFPFAVATP 292
           GAP+PS   S +   R  T   T     V TS  S P T        FP A + P
Sbjct: 73  GAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTASYGSDLYFPGATSQP 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,216
Number of Sequences: 336
Number of extensions: 3207
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)