Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0058.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    76   4e-15
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    72   7e-14
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    71   1e-13
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    66   6e-12
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    59   7e-10
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    47   2e-06
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    27   3.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   7.9  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 29/53 (54%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
 Frame = +1

Query: 103 ILVQMLKDEDNKYCVDCDA-KGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
           +L  +L++  NK C DC   + PRWASW+LG+F+CIRC+G HR+LGVH+S+V+
Sbjct: 15  VLKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVK 67



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 24/65 (36%), Positives = 35/65 (53%)
 Frame = +3

Query: 255 KSVNLDSWTPEQVVSLQQMGNXXARAVYEANLPDSFRRPQNDMSXGSFIRAKYEQXKYIA 434
           KSV+LDSWT EQ  ++ + GN  A   +EA L        +D    +FI+ KYE  K++ 
Sbjct: 67  KSVDLDSWTDEQTENMTRWGNERANLYWEAKLAGG--HVPSDSKIATFIKTKYEFKKWVL 124

Query: 435 KEWVP 449
              +P
Sbjct: 125 YPEIP 129


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 29/47 (61%), Positives = 36/47 (76%)
 Frame = +1

Query: 133 NKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVRVSISI 273
           N  C DC  +G +WASW+LGIFLC+RCA  HR LG H+SKV+ SIS+
Sbjct: 20  NNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVK-SISL 65



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
 Frame = +3

Query: 255 KSVNLDSWTPEQVVSLQQMGNXXARAVYEANLPDSFRRPQNDMS----XGSFIRAKYEQX 422
           KS++LD W+ +Q+  ++  GN  A   +  N P S   P N +S       +IR KYE+ 
Sbjct: 61  KSISLDEWSNDQIEKMKHWGNINANRYWNPN-PLSHPLPTNALSDEHVMEKYIRDKYERK 119

Query: 423 KYI----AKEWVPPQLP 461
            ++    +    PP LP
Sbjct: 120 LFLDENHSTNSKPPSLP 136


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 28/58 (48%), Positives = 37/58 (63%)
 Frame = +1

Query: 85  QDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
           ++  Q +L  +    DNK C DC AK P W+S   GI+LC+ C+  HRN+GVHIS VR
Sbjct: 5   KEESQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVR 62


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 65.7 bits (153), Expect = 6e-12
 Identities = 28/51 (54%), Positives = 36/51 (70%)
 Frame = +1

Query: 106 LVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
           L Q+ +  +NK C DCDA  P+WAS +LGIF+C+ C+G HR LGV  S VR
Sbjct: 5   LDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVR 55


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 58.8 bits (136), Expect = 7e-10
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
 Frame = +1

Query: 100 NILVQMLKDED--NKYCVDCDA-KGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
           NI +QML+  D  N  C DC + K   W S ++ + LCI C+G HR+LG HISK R
Sbjct: 714 NIFIQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTR 769



 Score = 31.9 bits (69), Expect = 0.091
 Identities = 20/87 (22%), Positives = 44/87 (50%)
 Frame = +3

Query: 249  QSKSVNLDSWTPEQVVSLQQMGNXXARAVYEANLPDSFRRPQNDMSXGSFIRAKYEQXKY 428
            +++S+ LDS + +  V L ++GN     VYE  L +   +P+ +    + ++  + Q KY
Sbjct: 767  KTRSLLLDSLSQQSKVLLCKIGNAAVNRVYEKGLSNPSLKPKPE--HNAQVKLAFAQKKY 824

Query: 429  IAKEWVPPQLPKVNWDKXIXEEMDRQK 509
            +   ++      V+ D  + E +++ K
Sbjct: 825  VEHAFI--DFAGVDADATLLEGLEQNK 849


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
 Frame = +1

Query: 106 LVQMLKD--EDNKYCVDCDAKGP-RWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
           LV+ LK+    ++ C DC+      W + +  + LCI C+G HR+LG HI+K+R
Sbjct: 672 LVKTLKEMHSSDQSCADCNTTARVEWCAINFPVVLCIDCSGIHRSLGTHITKIR 725



 Score = 33.5 bits (73), Expect = 0.030
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 255 KSVNLDSWTPEQVVSLQQMGNXXARAVYEANLPD-SFRRPQNDMSXGSFIRAKYEQXKYI 431
           +S+ LD + PE V  L   GN     +YE  + D   +  +N      F++ KY   ++I
Sbjct: 725 RSLTLDKFNPETVDLLYATGNSFVNEIYEGGITDWKIKNFENQERRVQFVKDKYLYKRFI 784


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 668 PPVREAVLLPSFSPH 624
           PPVR+ +++PS SPH
Sbjct: 376 PPVRDMLVIPSSSPH 390


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 189 GYIPVHPLRWDXSESGCSHLQ-SKSVNLDSWTPEQVVSLQQ 308
           GY  +HP+ WD       +      ++  SWT E +  +++
Sbjct: 95  GYKVIHPMGWDAFGLPAENAAIENGISASSWTYENIKKMKE 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,763
Number of Sequences: 5004
Number of extensions: 52118
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)