Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0058.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   1e-09
SB_17655| Best HMM Match : ArfGap (HMM E-Value=0.015)                  60   2e-09
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)                42   6e-04
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.014
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.22 
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)            28   6.3  
SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)                28   6.3  
SB_42993| Best HMM Match : RnaseH (HMM E-Value=1.3)                    28   6.3  
SB_27136| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     28   8.4  
SB_49128| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05)       28   8.4  

>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 28/57 (49%), Positives = 37/57 (64%)
 Frame = +1

Query: 88  DRCQNILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
           ++ +N L+++ K   N  C DC AK P WAS   GIF+CI C+G HRNLG  IS V+
Sbjct: 2   EKNRNALLELAKRPGNNTCADCGAKHPEWASASKGIFICITCSGVHRNLGTQISVVK 58



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
 Frame = +3

Query: 255 KSVNLDSWTPEQVVSLQQMGNXXARAVYEANLPDSFRRPQ---NDMSXGSFIRAKYEQXK 425
           KS+ LD+WT E++  + + GN  + A++  N+P  +RRP+     +    +IRAKYE+ +
Sbjct: 58  KSLRLDTWTDERLQFMIENGNEKSNAIWAKNVPICYRRPKCTDPHVLREQWIRAKYERKE 117

Query: 426 YI 431
           +I
Sbjct: 118 FI 119


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 23/53 (43%), Positives = 35/53 (66%)
 Frame = +1

Query: 100 NILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
           +I+ Q+ +   N  C DC +K P W S +LG+  CI C+G HR +GVH+S+V+
Sbjct: 87  SIVKQVQRLPGNDTCADCTSKDPTWLSTNLGVLTCIECSGVHRGMGVHVSRVQ 139


>SB_17655| Best HMM Match : ArfGap (HMM E-Value=0.015)
          Length = 401

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 37/98 (37%), Positives = 53/98 (54%)
 Frame = +3

Query: 162 RSTMGFMGFGYIPVHPLRWDXSESGCSHLQSKSVNLDSWTPEQVVSLQQMGNXXARAVYE 341
           R+ MGF+  G + +H LRW+ S+   +HL+SK              ++Q+G    RA   
Sbjct: 59  RAKMGFLELGSVHLHSLRWNSSQFRGTHLKSK--------------IRQLGFVDGRA--- 101

Query: 342 ANLPDSFRRPQNDMSXGSFIRAKYEQXKYIAKEWVPPQ 455
                 FRRPQ D +  +FIR KYEQ K+I K+ +PPQ
Sbjct: 102 ---NGDFRRPQTDSAMEAFIRKKYEQKKFIKKDGLPPQ 136



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +1

Query: 85  QDRCQNILVQMLKDEDNKYCVDCDAKG 165
           Q+  Q ILV MLK+E NKYC DC AKG
Sbjct: 13  QNANQAILVDMLKEEKNKYCADCAAKG 39


>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
          Length = 732

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 103 ILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNL 234
           IL  +   + NK C DC  +GP + +  +G F+C  C+G  R L
Sbjct: 15  ILRDLASQQHNKKCFDCGQRGPTYVNMTIGSFVCTSCSGILRGL 58



 Score = 32.3 bits (70), Expect = 0.39
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
 Frame = +3

Query: 255 KSVNLDSWTPEQVVSLQQMGNXXARAVY-----EANLPDSFRRPQNDMSXGSFIRAKYEQ 419
           KS+++ S+TP+++  LQ  GN   +  +      AN P+   R +  +    F+  KYE+
Sbjct: 65  KSISMTSFTPQEIEYLQGAGNEVCKKTWLGLWNSANNPEPESRDEQKVK--DFMIQKYER 122

Query: 420 XKYIAKEWVPPQLPKV 467
            ++    ++PPQ   V
Sbjct: 123 RRW----YIPPQQASV 134


>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = +3

Query: 255 KSVNLDSWTPEQVVSLQQMGNXXARAVYEANLPDSFRR---PQNDMSXGSFIRAKYEQXK 425
           +S+ LD+W PE +  + ++GN    ++YEA +    ++     N     ++I++KY   +
Sbjct: 309 RSLTLDAWEPEHLKLMSELGNSLINSIYEAKIAGDHKKINHLSNRSDREAWIKSKYIYHR 368

Query: 426 YIA 434
           +++
Sbjct: 369 FVS 371


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 285  EQVVSLQQMGNXXARAVYEANLPDSFR-RPQNDMS-XGSFIRAKYEQXKY 428
            E VV + ++GN  A  + E  +PD  R RP  D +    FI AKYE  KY
Sbjct: 870  EIVVLMVKIGNENANKLLEFKIPDDDRIRPDADSAKRREFICAKYEYKKY 919


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 352  QTRSDVHKTTCPXXRSYAPNTNXRNTLRRSGCP 450
            Q R+  H +TCP    Y  +   RN    S CP
Sbjct: 1375 QNRNGKHSSTCPSVLQYVDHIQNRNGKHSSTCP 1407


>SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 286 SKWCRYSKWETXAPGPCTRRTYQTRSDVHK 375
           +KWC Y K  T + G C R  +Q + D  K
Sbjct: 231 TKWCNYHKSSTHSDGECKR--HQQKGDTTK 258


>SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)
          Length = 445

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 282 ESTNRD*HSYFGDVNTQIPMXPSA 211
           ES+N+  HS FGDV    P+ PS+
Sbjct: 3   ESSNKTPHSVFGDVTPTGPLSPSS 26


>SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)
          Length = 529

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 282 ESTNRD*HSYFGDVNTQIPMXPSA 211
           ES+N+  HS FGDV    P+ PS+
Sbjct: 444 ESSNKTPHSVFGDVTPTGPLSPSS 467


>SB_42993| Best HMM Match : RnaseH (HMM E-Value=1.3)
          Length = 349

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = +1

Query: 268 SIRGLQSKWCRYSKWETXAPGPCTR---RTYQTRSDVHKTTCPXXRSYAPNTNXRNTLRR 438
           ++RG +  W R++K+E+ +   C       Y  ++          R Y+ NT   N +  
Sbjct: 120 AVRGSEKTWGRWTKFESLSHINCLELMAMFYGLKAFCSDARSVHIRVYSDNTTTLNYIAS 179

Query: 439 SGCPRSCPKSTGIKXXTKRWIXRKEKEVGDVIARTPAR 552
            G  +S   ++     TK WI   E+E+    A +P +
Sbjct: 180 MGGSQSIECNS---IATKIWIFCIEREIWLSAAYSPGK 214


>SB_27136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 476 IPVDFGQLRGHPLLRNVFLLFVFGA-YERXXGHVVLWTSERV 354
           +PV  G+LR HP+  +V L+  FG  +E    +V   T+E++
Sbjct: 646 VPVRIGELRMHPV--SVLLMAAFGVQFEERGPYVYKTTTEKI 685


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 603 GPVSXXTYYTSYEQQRGPGR 544
           GP S    Y SYEQQR P +
Sbjct: 199 GPASTNILYQSYEQQRNPSK 218


>SB_49128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 286 SKWCRYSKWETXAPGPCTRRTYQTRSDVHKTT 381
           +KWC Y K  T + G C +R  Q R    K +
Sbjct: 223 TKWCNYHKSSTHSDGEC-KRQQQKRDTTKKVS 253


>SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05)
          Length = 683

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 103 ILVQMLKDEDNKYCVDCDAKGPRW--ASWDLGIFLCIRCAGXHRNLGVHISKV 255
           I +Q+LKD  N+Y  D +  G  +   +   GIF+ IR  G +   G+ + K+
Sbjct: 171 IFLQLLKDSLNEYAYDAEIAGVTYNLDNTMYGIFMSIR--GYNHKQGILMEKI 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,520,760
Number of Sequences: 59808
Number of extensions: 425665
Number of successful extensions: 920
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)