Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0058.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro... 82 4e-16
At3g17660.1 68416.m02255 human Rev interacting-like family prote... 79 4e-15
At3g07940.1 68416.m00971 zinc finger and C2 domain protein, puta... 75 3e-14
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 72 3e-13
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta... 71 1e-12
At5g46750.1 68418.m05759 human Rev interacting-like family prote... 70 2e-12
At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)... 69 2e-12
At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)... 69 2e-12
At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)... 69 2e-12
At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)... 69 2e-12
At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (... 69 4e-12
At2g35210.2 68415.m04318 human Rev interacting-like family prote... 69 4e-12
At2g35210.1 68415.m04319 human Rev interacting-like family prote... 69 4e-12
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 68 5e-12
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 68 7e-12
At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing pro... 68 7e-12
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 67 9e-12
At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing... 66 2e-11
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 44 1e-04
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 44 1e-04
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro... 44 1e-04
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro... 44 1e-04
At1g67410.1 68414.m07672 exostosin family protein contains Pfam ... 29 2.2
At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containi... 29 3.9
At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containi... 29 3.9
At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containi... 29 3.9
At2g19910.1 68415.m02327 RNA-dependent RNA polymerase family pro... 28 5.2
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa... 28 5.2
At5g25752.1 68418.m03053 rhomboid family protein contains Pfam p... 28 6.8
At5g43210.1 68418.m05280 endo/excinuclease amino terminal domain... 27 9.0
>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 483
Score = 81.8 bits (193), Expect = 4e-16
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +1
Query: 91 RCQNILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
R + IL +LK +N+ C DC KGPRWAS +LGIF+C++C+G HR+LGVHISKVR
Sbjct: 14 RHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVR 69
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/75 (36%), Positives = 45/75 (60%)
Frame = +3
Query: 255 KSVNLDSWTPEQVVSLQQMGNXXARAVYEANLPDSFRRPQNDMSXGSFIRAKYEQXKYIA 434
+S LD+W PEQV +Q MGN A + +EA LP ++ R + +FIRAKYE+ ++++
Sbjct: 69 RSATLDTWLPEQVAFIQSMGNDKANSYWEAELPPNYDR----VGIENFIRAKYEEKRWVS 124
Query: 435 KEWVPPQLPKVNWDK 479
+ P+V ++
Sbjct: 125 RGEKARSPPRVEQER 139
>At3g17660.1 68416.m02255 human Rev interacting-like family protein
/ hRIP family protein similar to ARF GAP-like zinc
finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 117
Score = 78.6 bits (185), Expect = 4e-15
Identities = 32/52 (61%), Positives = 42/52 (80%)
Frame = +1
Query: 103 ILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
IL +LK DN+ C DC +K PRWAS +LGIF+C++C+G HR+LGVHIS+VR
Sbjct: 18 ILEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVR 69
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +3
Query: 249 QSKSVNLDSWTPEQVVSLQQMGNXXARAVYEANLPDSFRRPQNDMSXGSFIRAKY 413
Q +S+ LD+W P+QV ++ GN +E+ LP F R +D +FIRAKY
Sbjct: 67 QVRSITLDTWLPDQVAFMKSTGNAKGNEYWESELPQHFERSSSD----TFIRAKY 117
>At3g07940.1 68416.m00971 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana];contains Pfam
profile: PF01412 Putative GTP-ase activating protein for
Arf
Length = 385
Score = 75.4 bits (177), Expect = 3e-14
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = +1
Query: 106 LVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKV 255
L ++LK NKYC DC + P+W S LG+F+CI+C+G HR+LGVHISKV
Sbjct: 50 LEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKV 99
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 72.1 bits (169), Expect = 3e-13
Identities = 33/55 (60%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 97 QNILVQMLKDE-DNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
+NI+ + LK + +NK C DC AK P WAS GIFLCI C+ HRNLGVHIS VR
Sbjct: 12 KNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVR 66
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 255 KSVNLDSWTPEQVVSLQQMGNXXARAVYE 341
+S NLDSW+PEQ+ ++ GN A+ ++
Sbjct: 66 RSTNLDSWSPEQLRTMMFGGNNRAQVFFK 94
>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 336
Score = 70.5 bits (165), Expect = 1e-12
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +1
Query: 115 MLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKV 255
+L DN+ C DC A P+WAS ++G+F+C++C G HR+LG HISKV
Sbjct: 21 LLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKV 67
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Frame = +3
Query: 258 SVNLDSWTPEQVVSLQQMG-NXXARAVYEANLPDSFRRPQNDMSXGS---FIRAKYEQXK 425
SV LD W+ E+V S+ ++G N A ++YEA LPD+ +P D++ FIRAKYE +
Sbjct: 69 SVTLDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIRAKYELQE 128
Query: 426 YI 431
++
Sbjct: 129 FL 130
>At5g46750.1 68418.m05759 human Rev interacting-like family protein
/ hRIP family protein contains Pfam profile PF01412:
Putative GTP-ase activating protein for Arf
Length = 402
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 97 QNILVQMLKDE-DNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
+N++ + LK + +NK C DC AK P WAS GIFLCI C+ HR+LGVHIS VR
Sbjct: 9 KNVVFRKLKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVR 63
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 255 KSVNLDSWTPEQVVSLQQMGNXXARAVYE 341
+S NLDSW+PEQ+ ++ GN A+ ++
Sbjct: 63 RSTNLDSWSPEQLRTMMFGGNNRAQVFFK 91
>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 69.3 bits (162), Expect = 2e-12
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +1
Query: 115 MLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKV 255
+L DN+ C DC A P+WAS ++G+F+C++C G HR+LG HISKV
Sbjct: 21 LLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV 67
>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 69.3 bits (162), Expect = 2e-12
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +1
Query: 115 MLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKV 255
+L DN+ C DC A P+WAS ++G+F+C++C G HR+LG HISKV
Sbjct: 21 LLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV 67
>At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 69.3 bits (162), Expect = 2e-12
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +1
Query: 115 MLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKV 255
+L DN+ C DC A P+WAS ++G+F+C++C G HR+LG HISKV
Sbjct: 21 LLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV 67
>At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 69.3 bits (162), Expect = 2e-12
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +1
Query: 115 MLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKV 255
+L DN+ C DC A P+WAS ++G+F+C++C G HR+LG HISKV
Sbjct: 21 LLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV 67
>At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein
(ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1)
from GI:4519792 [Arabidopsis thaliana]; contains
InterPro accession IPR001164: Human Rev interacting-like
protein (hRIP)
Length = 456
Score = 68.5 bits (160), Expect = 4e-12
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = +1
Query: 130 DNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
+NK CVDC K P+WAS GIF+C+ C+G HR LGVHIS VR
Sbjct: 15 ENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVR 57
>At2g35210.2 68415.m04318 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 371
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/53 (54%), Positives = 36/53 (67%)
Frame = +1
Query: 100 NILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
++ ++ DNK C DC+AK P WAS GIFLCI C+ HR+LGVHIS VR
Sbjct: 11 SVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVR 63
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 255 KSVNLDSWTPEQVVSLQQMGNXXARAVYE 341
+S NLDSW+ EQ+ + GN A+ ++
Sbjct: 63 RSTNLDSWSSEQLKMMIYGGNNRAQVFFK 91
>At2g35210.1 68415.m04319 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 395
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/53 (54%), Positives = 36/53 (67%)
Frame = +1
Query: 100 NILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
++ ++ DNK C DC+AK P WAS GIFLCI C+ HR+LGVHIS VR
Sbjct: 11 SVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVR 63
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 255 KSVNLDSWTPEQVVSLQQMGNXXARAVYE 341
+S NLDSW+ EQ+ + GN A+ ++
Sbjct: 63 RSTNLDSWSSEQLKMMIYGGNNRAQVFFK 91
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +1
Query: 133 NKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVRVSISI 273
N C +C+A P WAS +LG+ LCI+C+G HRNLGVHISKVR S+S+
Sbjct: 479 NNACAECNAPEPDWASLNLGVLLCIQCSGVHRNLGVHISKVR-SLSL 524
>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 850
Score = 67.7 bits (158), Expect = 7e-12
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +1
Query: 133 NKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
N+ C DC A P WAS +LG+ +CI C+G HRNLGVHISKVR
Sbjct: 532 NERCADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISKVR 573
>At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing
protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA2 from GI:10441356
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 459
Score = 67.7 bits (158), Expect = 7e-12
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = +1
Query: 130 DNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
+NK CVDC K P+WAS GIF+C+ C+G HR LGVHIS VR
Sbjct: 15 ENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVR 57
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 67.3 bits (157), Expect = 9e-12
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = +1
Query: 100 NILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
++L + + N C +C+A P WAS +LG+ +CI C+G HRNLGVHISKVR
Sbjct: 468 DVLTILREIPGNNTCAECNAPDPDWASLNLGVLMCIECSGVHRNLGVHISKVR 520
>At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 768
Score = 66.5 bits (155), Expect = 2e-11
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = +1
Query: 133 NKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVR 258
N C DC A P WAS +LG+ +CI C+G HRNLGVHISKVR
Sbjct: 454 NDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVR 495
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +1
Query: 88 DRCQNILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVRVS 264
++ + I+ +LK +NK C++C++ GP++ F+C C+G HR + + ++
Sbjct: 9 EKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREFTHRVKSISMA 67
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +1
Query: 88 DRCQNILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVRVS 264
++ + I+ +LK +NK C++C++ GP++ F+C C+G HR + + ++
Sbjct: 9 EKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREFTHRVKSISMA 67
>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 648
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +1
Query: 85 QDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVRVS 264
++R + I+ ++K N+ C++C++ GP++ F+C+ C+G HR + V +S
Sbjct: 8 EERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHRVKSVSMS 67
>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 649
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +1
Query: 85 QDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWDLGIFLCIRCAGXHRNLGVHISKVRVS 264
++R + I+ ++K N+ C++C++ GP++ F+C+ C+G HR + V +S
Sbjct: 8 EERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHRVKSVSMS 67
>At1g67410.1 68414.m07672 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 430
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 566 SNSGGRAGVRAMTSPTSFSFLXIHLFVYXFIPVDFGQ 456
+ SGG+ V MT P +F FL + I VDFG+
Sbjct: 172 NRSGGKDHVIPMTHPNAFRFLRQQVNASILIVVDFGR 208
>At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 731
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = -2
Query: 325 AXLFPICCSDTTCSGVHESRLTLLLWRCEHPDS----DXSQRSGCTGIYPNPMKPIVDLL 158
A +FP D + S V ES L L E+PD+ + + S C I NP+ + +
Sbjct: 139 ASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCY 198
Query: 157 -HHSQRSICCL 128
H R + CL
Sbjct: 199 GSHVLRRLLCL 209
>At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 731
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = -2
Query: 325 AXLFPICCSDTTCSGVHESRLTLLLWRCEHPDS----DXSQRSGCTGIYPNPMKPIVDLL 158
A +FP D + S V ES L L E+PD+ + + S C I NP+ + +
Sbjct: 139 ASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCY 198
Query: 157 -HHSQRSICCL 128
H R + CL
Sbjct: 199 GSHVLRRLLCL 209
>At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 753
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = -2
Query: 325 AXLFPICCSDTTCSGVHESRLTLLLWRCEHPDS----DXSQRSGCTGIYPNPMKPIVDLL 158
A +FP D + S V ES L L E+PD+ + + S C I NP+ + +
Sbjct: 161 ASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCY 220
Query: 157 -HHSQRSICCL 128
H R + CL
Sbjct: 221 GSHVLRRLLCL 231
>At2g19910.1 68415.m02327 RNA-dependent RNA polymerase family
protein contains Pfam domain, PF05183: RNA dependent RNA
polymerase
Length = 992
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = -3
Query: 561 QRGPGRGPSDDVA------DFFFLSXDPSLRXXLYPS*LWAAAGAPTPSQC 427
Q+GP R D++A D +F+S +P L PS W ++ P+ C
Sbjct: 679 QKGP-RSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYC 728
>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 195
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/66 (28%), Positives = 24/66 (36%)
Frame = -2
Query: 412 YLARMNXPXDMSFCGRLNESGKFASYTARAXLFPICCSDTTCSGVHESRLTLLLWRCEHP 233
Y+ N P CG + S F YT PIC V+ L LL + P
Sbjct: 95 YIFTSNSPVKALPCGHVMHSTCFQEYTCSHYTCPICSKSLGDMQVYFRMLDALLAEQKMP 154
Query: 232 DSDXSQ 215
D +Q
Sbjct: 155 DEYLNQ 160
>At5g25752.1 68418.m03053 rhomboid family protein contains Pfam
profile PF01694: Rhomboid family
Length = 280
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 485 YXFIPVDFGQLRGHPLLRNVFLLFVFG-AYERXXGHVVLWTS 363
Y F+ F + L N+F L++FG E G+ LW S
Sbjct: 119 YQFVTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLS 160
>At5g43210.1 68418.m05280 endo/excinuclease amino terminal
domain-containing protein contains Pfam domain PF01541:
Endo/excinuclease amino terminal domain
Length = 170
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 237 TQIPMXPSAADAQEYTQIP*SPSWT 163
TQ+P+ PS++ QE ++IP S SW+
Sbjct: 32 TQVPI-PSSSSPQENSKIPKSKSWS 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,052,779
Number of Sequences: 28952
Number of extensions: 287497
Number of successful extensions: 670
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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