Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0056.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    39   5e-05
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    24   1.6  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.5  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 38.7 bits (86), Expect = 5e-05
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = +3

Query: 564 CGKTNLAIMTPTLPGYKXXAWG 629
           CGKTNLA+M PTLPGYK    G
Sbjct: 22  CGKTNLAMMKPTLPGYKIECVG 43



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = +2

Query: 509 ITNPQGKKRYIAAXFXGXLRENEPCHYDANTARVQXXCXGDXITXXNSTRXXVLRGPLNP 688
           ITNP+GKKRYI A F     +             +  C GD I      +   LR  +NP
Sbjct: 4   ITNPKGKKRYITAAFPSACGKTNLAMMKPTLPGYKIECVGDDIAWMKFDKEGRLRA-INP 62

Query: 689 ENG 697
           E G
Sbjct: 63  EYG 65


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 343 GRXANPECPRSRLREDNERTARLDVEFLEPR 251
           G+  +PE  R R     E+ ARL  EF E R
Sbjct: 13  GKNGSPEEKRPRTAFSAEQLARLKREFAENR 43


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 343 GRXANPECPRSRLREDNERTARLDVEFLEPR 251
           G    PE  R R     E+ ARL  EF E R
Sbjct: 13  GNGGTPEEKRPRTAFSGEQLARLKREFAENR 43


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 256 PRSNSSHDSHRINHVRRI 203
           P+SN  +  HR+N V R+
Sbjct: 364 PQSNKMNRMHRMNRVNRV 381


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 124 WTHNVRDTIL 153
           WTHNV D +L
Sbjct: 163 WTHNVLDMVL 172


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 298 LHAVGSGGTPGWPCDPKNTII 360
           LHA+ SG     P +PK+T +
Sbjct: 408 LHALTSGKCEHRPFEPKSTAV 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,998
Number of Sequences: 438
Number of extensions: 2855
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)