Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0055.Seq
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 99 4e-22
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 3.1
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 3.1
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom... 26 5.4
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 26 7.2
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 9.5
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 25 9.5
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 9.5
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 9.5
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 9.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 99 bits (238), Expect = 4e-22
Identities = 51/106 (48%), Positives = 64/106 (60%)
Frame = +3
Query: 261 PALEKLLPHIKGNVGFVFTRGXLV*VRDKLLEXKVQAPARPGAIXPLSVVIPAXNTGLGP 440
P LE+LLP ++GNVGFVFT L VR+ ++ + APARP AI PL V +PA NTG+ P
Sbjct: 71 PELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEP 130
Query: 441 EKTSFFQALSIPTKXSKGXXXXXXXXXS*SPVTRXGLLKPXFFNML 578
KTSFFQAL IPTK ++G S + G + NML
Sbjct: 131 GKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNML 176
Score = 63.3 bits (147), Expect = 4e-11
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +1
Query: 73 KSNYFVKIIQLLDXYPKCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTMMRKAIK 243
K+ YF K+ L + Y F+V DNV SQQMH + LRG++ ++MGKNTM+R+A++
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 515 VHILKPGDKVXASEAXLLQHVGTXLXFSYGLGVKXVYDSGTXFAPXFXDI 664
VH++ KV SEA LL + F+YG+ V +YD G F+P D+
Sbjct: 156 VHLVSKDAKVGPSEATLLNMLNIS-PFTYGMDVLTIYDQGNVFSPEILDV 204
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 248 WSLMALRIIVFFPMSTILEPR 186
W LM + +++F + ILEPR
Sbjct: 169 WGLMGINVVLFVVVQLILEPR 189
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 508 MISIVPFEXLVGIERAWKKEVFSGPRPVXWAGMTTDNGXMAP 383
+IS P + L+GI AW E S R T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC1527.02 |sft2||Golgi transport protein Sft2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -1
Query: 398 WXNGTRTS--WSLDFVLQQFVTDLXEXSAGEHEANVALDVWQQFLEGWIVXRWSLMALRI 225
W N RTS WS D+ + T+ ++ + +L W++++ I SL I
Sbjct: 27 WYNRLRTSMPWSNDYT--EIPTNASGGNSYFQSSEFSLSRWERYMLFGICLLGSLACYAI 84
Query: 224 IVFFPMSTILEPRSEIXI 171
F +L+PR + +
Sbjct: 85 ACFMFPVLVLKPRKFVLL 102
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 171 LMHLLRXHVIGTHDETFWVXVQEL 100
L+H L +V G HD +FW ++L
Sbjct: 200 LIHELTHNVHGEHDSSFWELFRQL 223
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -3
Query: 171 LMHLLRXHVIGTHDETFWVXVQELDDLNEVVRLPXSLVXPTH 46
++H L + G D V + +L E + P ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = -1
Query: 275 FLEGWIVXR--WSLMALRIIVFFPMSTILEPRSEIXI*CICCXPTLSAP 135
F GWI+ W+L+A I F+P + E R I C AP
Sbjct: 587 FFRGWIIVIIIWTLIAALYITFYP---LYESRDTIVYLCKLAIGKAKAP 632
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -3
Query: 171 LMHLLRXHVIGTHDETFWVXVQELDDLNEVVRLPXSLVXPTH 46
++H L + G D V + +L E + P ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -3
Query: 171 LMHLLRXHVIGTHDETFWVXVQELDDLNEVVRLPXSLVXPTH 46
++H L + G D V + +L E + P ++ PTH
Sbjct: 256 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 297
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -3
Query: 171 LMHLLRXHVIGTHDETFWVXVQELDDLNEVVRLPXSLVXPTH 46
++H L + G D V + +L E + P ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,153
Number of Sequences: 5004
Number of extensions: 47012
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -