Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0055.Seq
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 92 4e-19
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 92 4e-19
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 92 4e-19
07_03_0425 - 18070607-18070712,18071771-18072744 29 4.3
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 29 5.7
06_01_0080 + 644021-645463 29 5.7
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 28 9.9
10_08_0406 - 17688069-17690643,17691065-17691132 28 9.9
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 28 9.9
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 92.3 bits (219), Expect = 4e-19
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +3
Query: 237 HQRPPGNNPALEKLLPHIKGNVGFVFTRGXLV*VRDKLLEXKVQAPARPGAIXPLSVVIP 416
H GN LE L+P + GNVG +FT+G L VR+++ + KV APAR G + P+ VV+P
Sbjct: 69 HADNTGNKDFLE-LMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVP 127
Query: 417 AXNTGLGPEKTSFFQALSIPTKXSKG 494
NTGL P +TSFFQ L+IPTK +KG
Sbjct: 128 PGNTGLDPSQTSFFQVLNIPTKINKG 153
Score = 70.1 bits (164), Expect = 2e-12
Identities = 36/63 (57%), Positives = 42/63 (66%)
Frame = +1
Query: 61 KATWKSNYFVKIIQLLDXYPKCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTMMRKAI 240
KA K Y K+ QLLD Y K I ADNVGS Q+ +I LRG SIVLMGKNT++R+ I
Sbjct: 7 KAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCI 66
Query: 241 KDH 249
K H
Sbjct: 67 KVH 69
Score = 49.2 bits (112), Expect = 4e-06
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 515 VHILKPGDKVXASEAXLLQHVGTXLXFSYGLGVKXVYDSGTXFAPXFXDI 664
V ++K GDKV +SE+ LL +G FSYGL + VYDSG+ F+P D+
Sbjct: 161 VELIKKGDKVGSSESALLAKLGIR-PFSYGLVITNVYDSGSVFSPEVLDL 209
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 92.3 bits (219), Expect = 4e-19
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +3
Query: 237 HQRPPGNNPALEKLLPHIKGNVGFVFTRGXLV*VRDKLLEXKVQAPARPGAIXPLSVVIP 416
H GN LE L+P + GNVG +FT+G L VR+++ + KV APAR G + P+ VV+P
Sbjct: 69 HADNTGNKDFLE-LMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVP 127
Query: 417 AXNTGLGPEKTSFFQALSIPTKXSKG 494
NTGL P +TSFFQ L+IPTK +KG
Sbjct: 128 PGNTGLDPSQTSFFQVLNIPTKINKG 153
Score = 70.1 bits (164), Expect = 2e-12
Identities = 36/63 (57%), Positives = 42/63 (66%)
Frame = +1
Query: 61 KATWKSNYFVKIIQLLDXYPKCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTMMRKAI 240
KA K Y K+ QLLD Y K I ADNVGS Q+ +I LRG SIVLMGKNT++R+ I
Sbjct: 7 KAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCI 66
Query: 241 KDH 249
K H
Sbjct: 67 KVH 69
Score = 49.2 bits (112), Expect = 4e-06
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 515 VHILKPGDKVXASEAXLLQHVGTXLXFSYGLGVKXVYDSGTXFAPXFXDI 664
V ++K GDKV +SE+ LL +G FSYGL + VYDSG+ F+P D+
Sbjct: 161 VELIKKGDKVGSSESALLAKLGIR-PFSYGLVITNVYDSGSVFSPEVLDL 209
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 92.3 bits (219), Expect = 4e-19
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +3
Query: 237 HQRPPGNNPALEKLLPHIKGNVGFVFTRGXLV*VRDKLLEXKVQAPARPGAIXPLSVVIP 416
H GN LE L+P + GNVG +FT+G L VR+++ + KV APAR G + P+ VV+P
Sbjct: 69 HADNTGNKEFLE-LMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVP 127
Query: 417 AXNTGLGPEKTSFFQALSIPTKXSKG 494
NTGL P +TSFFQ L+IPTK +KG
Sbjct: 128 PGNTGLDPSQTSFFQVLNIPTKINKG 153
Score = 70.1 bits (164), Expect = 2e-12
Identities = 36/63 (57%), Positives = 42/63 (66%)
Frame = +1
Query: 61 KATWKSNYFVKIIQLLDXYPKCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTMMRKAI 240
KA K Y K+ QLLD Y K I ADNVGS Q+ +I LRG SIVLMGKNT++R+ I
Sbjct: 7 KAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCI 66
Query: 241 KDH 249
K H
Sbjct: 67 KVH 69
Score = 49.2 bits (112), Expect = 4e-06
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 515 VHILKPGDKVXASEAXLLQHVGTXLXFSYGLGVKXVYDSGTXFAPXFXDI 664
V ++K GDKV +SE+ LL +G FSYGL + VYDSG+ F+P D+
Sbjct: 161 VELIKKGDKVGSSESALLAKLGIR-PFSYGLVITNVYDSGSVFSPEVLDL 209
>07_03_0425 - 18070607-18070712,18071771-18072744
Length = 359
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 138 CR*RGXATDASDPYLATWLQYRAHGKKHNDAQSHQRPPGNNPALEKLLPHIK 293
CR G +DP L T + AH +K + PAL + PH++
Sbjct: 203 CRGGGGGDSQNDPMLQTVNEVTAHSRKARALVLNTSASMEGPALAHIAPHMR 254
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 10 KFHRSPYATLSRMGRXDKATWKSNYFVKIIQLLDXYPKCFIVGADNVGSQQMHQIXISLR 189
K R+ TLS+ + K I ++ Y ++ DN+ +Q++ + L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 190 GSS-IVLMGKNTM 225
SS I L GK M
Sbjct: 63 SSSRIFLAGKKVM 75
>06_01_0080 + 644021-645463
Length = 480
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 476 RDRKSLEERGLLWTEAGVXGGND 408
R K++EERGLL+ GV GG +
Sbjct: 113 RREKAMEERGLLYLGMGVSGGEE 135
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 22 SPYATLSRMGRXDKATWKSNYFVKIIQLLDXYPKCFIVGADNVGSQQMHQIXISLRGSS- 198
S TLS+ + K I ++ Y ++ DN+ +Q++ + L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 199 IVLMGKNTM 225
I L GK M
Sbjct: 203 IFLAGKKVM 211
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 93 DHPTLGRVPKMFHRGCR*RGXATD-ASDPYLATWLQYRAHGKKHNDAQSHQR 245
D P R ++FHR R RG A D A D W+ + ND Q H +
Sbjct: 789 DDPAARRGARLFHR-LRRRGPAFDKAWDELARFWVHLVVYLAPSNDVQGHAK 839
>02_05_0833 +
32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 280 NSFSRAGLXPGGL*WLCASLCFFP*ARYWSHVA 182
+S SRAGL PGG L A+ RYW H A
Sbjct: 39 SSHSRAGL-PGGARLLAAAAPLHCAGRYWPHAA 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,176,476
Number of Sequences: 37544
Number of extensions: 353366
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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