Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0055.Seq
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   109   2e-24
U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       28   6.7  
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    28   6.7  
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    28   6.7  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  109 bits (262), Expect = 2e-24
 Identities = 52/81 (64%), Positives = 61/81 (75%)
 Frame = +3

Query: 252 GNNPALEKLLPHIKGNVGFVFTRGXLV*VRDKLLEXKVQAPARPGAIXPLSVVIPAXNTG 431
           G NP+LEKLLPHI  NVGFVFT+  L  +R KLLE +  APA+ GAI P  V +P  NTG
Sbjct: 70  GKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTG 129

Query: 432 LGPEKTSFFQALSIPTKXSKG 494
           +GPEKTSFFQAL IPTK ++G
Sbjct: 130 MGPEKTSFFQALQIPTKIARG 150



 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 39/69 (56%), Positives = 56/69 (81%)
 Frame = +1

Query: 46  MGRXDKATWKSNYFVKIIQLLDXYPKCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTM 225
           M R D++TWK+NYF K+++L + YPKC +VG DNVGS+QM +I  ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 226 MRKAIKDHL 252
           +RKA++ HL
Sbjct: 61  IRKALRGHL 69



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 27/52 (51%), Positives = 34/52 (65%)
 Frame = +2

Query: 509 NXVHILKPGDKVXASEAXLLQHVGTXLXFSYGLGVKXVYDSGTXFAPXFXDI 664
           N VH++K GDKV ASE+ LL  +G    FSYGL V+ VYD GT + P   D+
Sbjct: 156 NDVHLIKEGDKVGASESALLNMLGV-TPFSYGLVVRQVYDDGTLYTPEVLDM 206


>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 272 LEGWIVXRWSLMALRIIVF 216
           + GWIV  W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 272 LEGWIVXRWSLMALRIIVF 216
           + GWIV  W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 272 LEGWIVXRWSLMALRIIVF 216
           + GWIV  W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,421,288
Number of Sequences: 27780
Number of extensions: 277783
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)