Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0055.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...    89   3e-18
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...    89   3e-18
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)       88   7e-18

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 43/86 (50%), Positives = 58/86 (67%)
 Frame = +3

Query: 237 HQRPPGNNPALEKLLPHIKGNVGFVFTRGXLV*VRDKLLEXKVQAPARPGAIXPLSVVIP 416
           H    GN  A+  LLP ++GNVG +FT+G L  V +++ + KV APAR G + P+ VV+ 
Sbjct: 68  HSENSGNT-AILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQ 126

Query: 417 AXNTGLGPEKTSFFQALSIPTKXSKG 494
             NTGL P +TSFFQ L+IPTK +KG
Sbjct: 127 PGNTGLDPSQTSFFQVLNIPTKINKG 152



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 33/68 (48%), Positives = 45/68 (66%)
 Frame = +1

Query: 46  MGRXDKATWKSNYFVKIIQLLDXYPKCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTM 225
           M +  KA  K  Y  K+ QL+D Y +  +V ADNVGS Q+  I   LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 226 MRKAIKDH 249
           M+++++ H
Sbjct: 61  MKRSVRIH 68



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/50 (50%), Positives = 34/50 (68%)
 Frame = +2

Query: 515 VHILKPGDKVXASEAXLLQHVGTXLXFSYGLGVKXVYDSGTXFAPXFXDI 664
           V ++K GDKV +SEA LL  +G    FSYGL V+ VYD+G+ F+P   D+
Sbjct: 160 VELIKQGDKVGSSEAALLAKLGIR-PFSYGLVVQSVYDNGSVFSPEVLDL 208


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 43/86 (50%), Positives = 58/86 (67%)
 Frame = +3

Query: 237 HQRPPGNNPALEKLLPHIKGNVGFVFTRGXLV*VRDKLLEXKVQAPARPGAIXPLSVVIP 416
           H    GN  A+  LLP ++GNVG +FT+G L  V +++ + KV APAR G + P+ VV+ 
Sbjct: 68  HSENTGNT-AILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQ 126

Query: 417 AXNTGLGPEKTSFFQALSIPTKXSKG 494
             NTGL P +TSFFQ L+IPTK +KG
Sbjct: 127 PGNTGLDPSQTSFFQVLNIPTKINKG 152



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 33/68 (48%), Positives = 45/68 (66%)
 Frame = +1

Query: 46  MGRXDKATWKSNYFVKIIQLLDXYPKCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTM 225
           M +  KA  K  Y  K+ QL+D Y +  +V ADNVGS Q+  I   LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 226 MRKAIKDH 249
           M+++++ H
Sbjct: 61  MKRSVRIH 68



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/50 (50%), Positives = 34/50 (68%)
 Frame = +2

Query: 515 VHILKPGDKVXASEAXLLQHVGTXLXFSYGLGVKXVYDSGTXFAPXFXDI 664
           V ++K GDKV +SEA LL  +G    FSYGL V+ VYD+G+ F+P   D+
Sbjct: 160 VELIKQGDKVGSSEAALLAKLGIR-PFSYGLVVQSVYDNGSVFSPEVLDL 208


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 41/79 (51%), Positives = 55/79 (69%)
 Frame = +3

Query: 258 NPALEKLLPHIKGNVGFVFTRGXLV*VRDKLLEXKVQAPARPGAIXPLSVVIPAXNTGLG 437
           N A   LLP ++GNVG +FT+G L  V +++ + KV APAR G + P+ VV+   NTGL 
Sbjct: 75  NQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 134

Query: 438 PEKTSFFQALSIPTKXSKG 494
           P +TSFFQ L+IPTK +KG
Sbjct: 135 PSQTSFFQVLNIPTKINKG 153



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/63 (50%), Positives = 43/63 (68%)
 Frame = +1

Query: 61  KATWKSNYFVKIIQLLDXYPKCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTMMRKAI 240
           KA  K  Y  K+ QLL+ Y +  +V ADNVGS Q+  I   LRG S+VLMGKNTMM++++
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66

Query: 241 KDH 249
           + H
Sbjct: 67  RIH 69



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +2

Query: 515 VHILKPGDKVXASEAXLLQHVGTXLXFSYGLGVKXVYDSGTXFAP 649
           V ++K GDKV +SEA LL  +G    FSYGL V+ VYD+G+ F P
Sbjct: 161 VELIKKGDKVGSSEAALLAKLGIR-PFSYGLVVESVYDNGSVFNP 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,927,936
Number of Sequences: 28952
Number of extensions: 265970
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)