Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0050.Seq
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)                 29   3.4  
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           29   3.4  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               29   3.4  
SB_8696| Best HMM Match : Pox_A32 (HMM E-Value=0.16)                   28   6.0  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
          Length = 665

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 259 TYXTDXXAAAXTKRPPAFTMAPRRELKPPTAAVP 360
           T   +   A  T  PP  TMAP+  L P T A P
Sbjct: 62  TVAPETTTAPVTTLPPDSTMAPKSTLAPETTAAP 95


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 388 VCVTLPWAPGTYIWNSKLSVRXAKQLTTQHLKGIP 492
           + V L W  G + W  K   +  +Q+   H +G+P
Sbjct: 268 ILVLLEWFKGFFQWMDKPECKSCRQVAVYHQRGVP 302


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 259  TYXTDXXAAAXTKRPPAFTMAPRRELKPPTAAVP 360
            T   +   A  T  PP  TMAP+  L P T A P
Sbjct: 1863 TVAPETTTAPVTTLPPDSTMAPKSTLAPETTAAP 1896



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 259 TYXTDXXAAAXTKRPPAFTMAPRRELKPPTAAVPG 363
           T   +   A  T   P  TMAP   + P T AVPG
Sbjct: 391 TMAPETTMAPETTIAPETTMAPETTIAPETTAVPG 425


>SB_8696| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
          Length = 1152

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 108 VREGLHGDXLKTRSVVKDRPCGLIRFVVTRL 16
           +R+G+H +  +T S      CG  RF+V RL
Sbjct: 358 IRDGVHLEIKRTASGTGPTSCGKTRFIVDRL 388


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 259  TYXTDXXAAAXTKRPPAFTMAPRRELKPPTAAVP 360
            TY  +  AA  T   P  T+AP    +P T A+P
Sbjct: 2772 TYEPETTAAPGTTLAPETTVAPETTYEPETTALP 2805


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,524,866
Number of Sequences: 59808
Number of extensions: 307520
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)