Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0040.Seq
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   1.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   8.6  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   8.6  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 74  KXGSPVLLQGIHSKHTGDRTLCGH 145
           K G+P++  G   ++TG+R + G+
Sbjct: 280 KLGAPIVAGGDAGRYTGERGMMGY 303


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 104 SLVEAPETLPCVYLPGGVSYAAVLP 30
           SLVE  +TLPCV+  G +    + P
Sbjct: 227 SLVE--DTLPCVFFLGSILIFFIFP 249


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 74  KXGSPVLLQGIHSKHTGDRTLCGH 145
           K G+PV   G   K+TG+  + G+
Sbjct: 276 KLGAPVKGAGNSGKYTGEAGMLGY 299


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 698 KXMHAKRLLXHHVMCV 651
           + +H+KRLL +++ C+
Sbjct: 45  RILHSKRLLLNYINCL 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,738
Number of Sequences: 336
Number of extensions: 3004
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)