Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0040.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    31   0.009
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    31   0.009
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    26   0.47 

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +3

Query: 3   KTRLA--LRKTG---QYSGIADAARKIYARXGLRCFYKGYIPNILGIVPYAGIDLAVYET 167
           +TRLA  + K G   +++G+ +   KI+   G+   Y+G+  ++ GI+ Y       Y+T
Sbjct: 140 RTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDT 199

Query: 168 LK 173
            +
Sbjct: 200 AR 201



 Score = 28.7 bits (61), Expect = 0.066
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 275 YPLALVRTRLQAREN-AARXAEGTMRG-VFREIVQREGIRGXYRGITPNFIKVIPAVSIS 448
           YPL   RTRL A    A    E T  G    +I + +GI G YRG   +   +I   +  
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAY 193

Query: 449 YVVYEYAGGSL 481
           +  Y+ A G L
Sbjct: 194 FGFYDTARGML 204


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +3

Query: 3   KTRLA--LRKTG---QYSGIADAARKIYARXGLRCFYKGYIPNILGIVPYAGIDLAVYET 167
           +TRLA  + K G   +++G+ +   KI+   G+   Y+G+  ++ GI+ Y       Y+T
Sbjct: 140 RTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDT 199

Query: 168 LK 173
            +
Sbjct: 200 AR 201



 Score = 28.7 bits (61), Expect = 0.066
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 275 YPLALVRTRLQAREN-AARXAEGTMRG-VFREIVQREGIRGXYRGITPNFIKVIPAVSIS 448
           YPL   RTRL A    A    E T  G    +I + +GI G YRG   +   +I   +  
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAY 193

Query: 449 YVVYEYAGGSL 481
           +  Y+ A G L
Sbjct: 194 FGFYDTARGML 204


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 361 SEHASHCTLRASRCIFSCLQSGPD*RERVGAHLPQRHEILPHA 233
           + + + CT+  S   F+C+Q   + R R+G HL   H  +P A
Sbjct: 185 NNYTTDCTIEYSTGNFTCIQIVFNLRRRLGYHL--FHTYIPSA 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,750
Number of Sequences: 438
Number of extensions: 3476
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)