Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0037x.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   6.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.4  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 287  VEIVGPPDQLDWELVHRYTTLSF*PHVLRASRFRSG 180
            VEI   PD  +W +  +  T    P  LR  RF +G
Sbjct: 1109 VEIFEIPDSTEWSVRFKRGTSMLIPKALRFDRFVAG 1144


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 247 SSQSSWSGGPTISTRTVSSA 306
           SS SS+S  PT S+ T+SS+
Sbjct: 327 SSSSSFSSSPTSSSSTISSS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,357
Number of Sequences: 5004
Number of extensions: 23715
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)