Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0032.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    30   2.0  
11_07_0011 - 27337654-27337734,27337789-27337890                       28   6.2  
09_02_0270 + 6536957-6537058,6537113-6537193                           28   6.2  

>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 496 PLQNPISXFXXPDXPXISPXNTMHPRXSPXIXPPAXXPCVRPXP 627
           P   P+     P  P   P  +  P+ +P + PPA  P   P P
Sbjct: 243 PSVAPVQPPQRPPAPATKPPPSFPPQLAPTMPPPAHAPAETPAP 286


>11_07_0011 - 27337654-27337734,27337789-27337890
          Length = 60

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 489 AFPPSKSHFRLXPXRXTXHIP 551
           A PPS SH R+ P   T H+P
Sbjct: 16  ASPPSPSHARMVPNDDTQHVP 36


>09_02_0270 + 6536957-6537058,6537113-6537193
          Length = 60

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 489 AFPPSKSHFRLXPXRXTXHIP 551
           A PPS SH R+ P   T H+P
Sbjct: 16  ASPPSPSHARMVPNDDTQHVP 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,562
Number of Sequences: 37544
Number of extensions: 188334
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)