Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0014.Seq
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-1|AAB65956.2|  477|Caenorhabditis elegans Temporarily a...    36   0.027
Z92812-8|CAB07275.1|  337|Caenorhabditis elegans Hypothetical pr...    33   0.33 
AL033510-6|CAA22062.1|  343|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    29   3.1  

>AF016448-1|AAB65956.2|  477|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 196 protein.
          Length = 477

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 507 PSRWTGGSTGAVXDIKXQGKXGSFWAFSTTG 599
           P  +     GAV  +K QG  GS WAFSTTG
Sbjct: 265 PESFDWREKGAVTQVKNQGNCGSCWAFSTTG 295


>Z92812-8|CAB07275.1|  337|Caenorhabditis elegans Hypothetical
           protein T03E6.7 protein.
          Length = 337

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +3

Query: 531 TGAVXDIKXQGKXGSFWAFSTTG 599
           T  V D+K QG  GS WAFS TG
Sbjct: 129 THLVTDVKNQGMCGSCWAFSATG 151


>AL033510-6|CAA22062.1|  343|Caenorhabditis elegans Hypothetical
           protein Y40H7A.10 protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = +3

Query: 531 TGAVXDIKXQGKXGSFWAFSTTGXFXXXXGISXQGRLXLXS 653
           T  V  IK QG  GS WAF+T         IS  G   L S
Sbjct: 147 TNHVTGIKYQGPCGSCWAFATAAAIESAVSISGGGLQSLSS 187


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 267 RMKIYAEHXHIIAKHNQKYEMGLVXYKLGMNKY 365
           R  +Y++    + +HN  YE+G+  YK+  N++
Sbjct: 154 RFNVYSKVKKEVDEHNIMYELGMSSYKMSTNQF 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,697,701
Number of Sequences: 27780
Number of extensions: 172924
Number of successful extensions: 255
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)