Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0004.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 68 8e-12
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 64 1e-10
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 60 2e-09
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 58 5e-09
07_03_1371 - 26100553-26101767 56 4e-08
08_02_0774 - 21047696-21048889 51 1e-06
01_06_1220 + 35493575-35494765 49 4e-06
12_02_1094 + 26032135-26032164,26032975-26033152,26033234-260340... 29 2.7
08_02_0318 + 15710834-15711775 29 3.5
04_03_0175 + 12269091-12269561 29 3.5
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426... 28 8.2
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 67.7 bits (158), Expect = 8e-12
Identities = 35/83 (42%), Positives = 45/83 (54%)
Frame = +3
Query: 3 IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
IA+EV K AG YDP R E G+DP V VPV+GGH+G+TI+P+L
Sbjct: 168 IAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGIDPKDVNVPVVGGHAGVTILPLL 227
Query: 183 XQCQPAXKXSDPAKIKAXTERIQ 251
Q P + P +I T+RIQ
Sbjct: 228 SQVHPPCSFT-PDEISYLTKRIQ 249
Score = 35.9 bits (79), Expect = 0.031
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +1
Query: 289 AGSATLSMAYAGARLTASVLRGLKGESNVV 378
AGSATLSMA+A A+ + LR ++G++ VV
Sbjct: 262 AGSATLSMAFAAAKFGDACLRAMRGDAGVV 291
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/83 (42%), Positives = 43/83 (51%)
Frame = +3
Query: 3 IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
IA+EV K AG YDP R E G+DP V VPVIGGH+G+TI+P+L
Sbjct: 183 IAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLL 242
Query: 183 XQCQPAXKXSDPAKIKAXTERIQ 251
Q P + +I T RIQ
Sbjct: 243 SQVNPPCSFTS-EEISYLTTRIQ 264
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 59.7 bits (138), Expect = 2e-09
Identities = 47/161 (29%), Positives = 59/161 (36%)
Frame = +3
Query: 3 IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
IA+EV K AG YD + V T V VPV+GGH+GITI+P+
Sbjct: 153 IAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTDVNVPVVGGHAGITILPLF 212
Query: 183 XQCQPAXKXSDPAKIKAXTERIQELVPXXXXXXXXXXXXXXXHGVRRRAAHGLRAQGXKG 362
Q PA IKA T+R Q+ +G G
Sbjct: 213 SQATPATNALSDEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFANACLKGLNG 272
Query: 363 RVQXXXXXXXXXXXXXXXXXXAXPVVLGKNGLQKVLGYGTL 485
V A V LGKNG+++VLG G L
Sbjct: 273 -VPDVVECSFVQSTVTELPFFASKVKLGKNGVEEVLGLGQL 312
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1
Query: 292 GSATLSMAYAGARLTASVLRGLKGESNVV 378
GSATLSMAYAGA + L+GL G +VV
Sbjct: 249 GSATLSMAYAGAVFANACLKGLNGVPDVV 277
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 58.4 bits (135), Expect = 5e-09
Identities = 47/161 (29%), Positives = 59/161 (36%)
Frame = +3
Query: 3 IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
IA+EV K AG YD + V T V VPV+GGH+GITI+P+
Sbjct: 152 IAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTEVNVPVVGGHAGITILPLF 211
Query: 183 XQCQPAXKXSDPAKIKAXTERIQELVPXXXXXXXXXXXXXXXHGVRRRAAHGLRAQGXKG 362
Q PA IKA T+R Q+ +G G
Sbjct: 212 SQATPASNALSHEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLKGLNG 271
Query: 363 RVQXXXXXXXXXXXXXXXXXXAXPVVLGKNGLQKVLGYGTL 485
V A V LGKNG+++VLG G L
Sbjct: 272 -VPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGQL 311
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1
Query: 292 GSATLSMAYAGARLTASVLRGLKGESNVV 378
GSATLSMAYAGA + L+GL G +VV
Sbjct: 248 GSATLSMAYAGAVFADACLKGLNGVPDVV 276
>07_03_1371 - 26100553-26101767
Length = 404
Score = 55.6 bits (128), Expect = 4e-08
Identities = 30/83 (36%), Positives = 43/83 (51%)
Frame = +3
Query: 3 IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
IA+EVLK G YDP + E G+ V VPV+GGH+ TI+P+L
Sbjct: 203 IAAEVLKRKGVYDPRKLFGVTTLDVVRANTFVAEMKGLPLADVDVPVVGGHAAATILPLL 262
Query: 183 XQCQPAXKXSDPAKIKAXTERIQ 251
+ +P +D +++A T RIQ
Sbjct: 263 SKARPKTAFTD-EEVEALTRRIQ 284
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/53 (45%), Positives = 29/53 (54%)
Frame = +1
Query: 292 GSATLSMAYAGARLTASVLRGLKGESNVVRLPVGQIXAXGXHVVPPXPLCSAR 450
GSATLSMAYA AR + LRGL G+++V Q A VP P + R
Sbjct: 300 GSATLSMAYAAARFLEASLRGLDGDADVYECSYVQCQA-----VPELPFFACR 347
>08_02_0774 - 21047696-21048889
Length = 397
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/83 (33%), Positives = 43/83 (51%)
Frame = +3
Query: 3 IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
IA+EVLK G Y+P + + + V VPV+GGH+GITI+P+L
Sbjct: 201 IAAEVLKQKGVYNPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLL 260
Query: 183 XQCQPAXKXSDPAKIKAXTERIQ 251
+ P+ +D + + T+RIQ
Sbjct: 261 SKTMPSVTFTD-EETEQLTKRIQ 282
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +1
Query: 289 AGSATLSMAYAGARLTASVLRGLKGESNV 375
AGSATLSMAYA AR S LR L G+ +V
Sbjct: 295 AGSATLSMAYAAARFVESSLRALAGDPDV 323
>01_06_1220 + 35493575-35494765
Length = 396
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +3
Query: 3 IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
IA+EVLK G Y+P + + + V VPV+GGH+GITI+P+L
Sbjct: 201 IAAEVLKQKGVYNPKKLFGVTTLDVVRANTFIAQKKNLKLIDVDVPVVGGHAGITILPLL 260
Query: 183 XQCQPAXKXSDPAKIKAXTERIQ 251
+ +P+ ++ + + T RIQ
Sbjct: 261 SKTRPSVTFTN-EETEELTRRIQ 282
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +1
Query: 289 AGSATLSMAYAGARLTASVLRGLKGESNV 375
AGSATLSMAYA AR S LR L G+ +V
Sbjct: 295 AGSATLSMAYAAARFVESSLRALAGDPDV 323
>12_02_1094 +
26032135-26032164,26032975-26033152,26033234-26034017,
26034135-26034216,26034968-26035177
Length = 427
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 476 RDPSTNXXAASPEXGPRPTXQEHSRPGQAXAKK 574
+D ASPE PRP + HS G AKK
Sbjct: 278 KDDDDELPRASPEKRPRPRPRPHSGDGGGEAKK 310
>08_02_0318 + 15710834-15711775
Length = 313
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +1
Query: 280 GRXAGSATLSMAYAGARLTASVLRGLKGESNVVRLPV--GQIXAXGXHVVP--PXPLCSA 447
GR L + GARL ++ GL + V+RLP + + HVVP PL +
Sbjct: 58 GRLRRMLDLGPSVRGARLLLAIFAGLLAAAEVIRLPFFSRAVVSPPRHVVPCLAYPLVAH 117
Query: 448 RTASRRFXGT 477
A F T
Sbjct: 118 GVAEPCFLAT 127
>04_03_0175 + 12269091-12269561
Length = 156
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -3
Query: 528 GRGPXSGLAASXFVEGSRTXEPSGGRSCRAQ 436
G G GL A F EGS T GGR A+
Sbjct: 20 GGGVGGGLGAESFAEGSGTCTGGGGRGAAAE 50
>03_06_0704 +
35641774-35642031,35642122-35642446,35642546-35642699,
35643662-35643706,35644121-35644180,35644532-35644694,
35645356-35645717,35645985-35646303
Length = 561
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = +2
Query: 443 RQERPPEGSXVRDPSTNXXAASPEXGPRPTXQEHSRP 553
R +PP RDP + + + P+P+ +H P
Sbjct: 105 RDRKPPPPPTHRDPKPSLPPTTTQRDPKPSPPQHKAP 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,078,676
Number of Sequences: 37544
Number of extensions: 214666
Number of successful extensions: 656
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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