Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0004.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)                48   1e-05
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)                       29   2.7  
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  

>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
          Length = 368

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
 Frame = +3

Query: 102 EXXGVDPTSVAVPVIGGHSGITIIPILXQCQPAXKXSDPAKIKAXTERIQELVPXXXXXX 281
           E  G+D  ++ +PVIGGHSG+TI+P+L Q  P    +   +++  T+RIQ          
Sbjct: 127 EAKGLDVNNIKIPVIGGHSGVTILPLLSQTTPNVTFTQD-ELEKLTDRIQNA-------- 177

Query: 282 XXXXXXXXXHGVRRRAAHGLRA-QGXKGRVQXXXXXXXXXXXXXXXXXXAXPVVLGKNGL 458
                      V  +A   + A  G K  VQ                  A PVVLG NG+
Sbjct: 178 -------GTEVVNAKAGAVIEALNGKKDVVQCAFIKSDLTEAGYF----ATPVVLGTNGV 226

Query: 459 QKVLGYGTL 485
           +K LG G L
Sbjct: 227 EKNLGMGKL 235


>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
          Length = 315

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 136 TATEVGSTPXISPTKVAVATTSRVVTPST 50
           TAT   ST   +P K   ATT  V+TP+T
Sbjct: 121 TATATTSTTATTPAKTTSATTKPVMTPTT 149


>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 142 TGTATEVGSTPXISPTKVA-VATTSRVVTPSTRFGSYXP 29
           T   T + +TP  S T+   +ATT   VTPST F    P
Sbjct: 758 TTQTTLIATTPEASITQTTTIATTPSAVTPSTSFTDSLP 796


>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3133

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 475 YPRTFWRPFLPSTTGLAELRGXPEP 401
           YPR+ WR  L    G+ E RG P P
Sbjct: 429 YPRSLWRRLLVDLRGIVE-RGTPSP 452


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,667,680
Number of Sequences: 59808
Number of extensions: 207389
Number of successful extensions: 403
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)