Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0004.Seq
         (698 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ402957-1|ABD77290.1|  305|Homo sapiens mitochondrial malate de...    62   2e-09
CR536548-1|CAG38785.1|  338|Homo sapiens MDH2 protein.                 62   2e-09
BC001917-1|AAH01917.1|  338|Homo sapiens malate dehydrogenase 2,...    62   2e-09
AF047470-1|AAC03787.1|  338|Homo sapiens malate dehydrogenase pr...    62   2e-09
AC005077-1|AAS07425.1|  316|Homo sapiens unknown protein.              62   2e-09

>DQ402957-1|ABD77290.1|  305|Homo sapiens mitochondrial malate
           dehydrogenase 2, NAD protein.
          Length = 305

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 34/84 (40%), Positives = 43/84 (51%)
 Frame = +3

Query: 3   IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
           I +EV K  G Y+PN+                 E  G+DP  V VPVIGGH+G TIIP++
Sbjct: 129 ITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLI 188

Query: 183 XQCQPAXKXSDPAKIKAXTERIQE 254
            QC P        ++ A T RIQE
Sbjct: 189 SQCTPKVDFPQD-QLTALTGRIQE 211



 Score = 38.3 bits (85), Expect = 0.026
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 289 AGSATLSMAYAGARLTASVLRGLKGESNVV 378
           AGSATLSMAYAGAR   S++  + G+  VV
Sbjct: 223 AGSATLSMAYAGARFVFSLVDAMNGKEGVV 252


>CR536548-1|CAG38785.1|  338|Homo sapiens MDH2 protein.
          Length = 338

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 34/84 (40%), Positives = 43/84 (51%)
 Frame = +3

Query: 3   IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
           I +EV K  G Y+PN+                 E  G+DP  V VPVIGGH+G TIIP++
Sbjct: 150 ITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLI 209

Query: 183 XQCQPAXKXSDPAKIKAXTERIQE 254
            QC P        ++ A T RIQE
Sbjct: 210 SQCTPKVDFPQD-QLTALTGRIQE 232



 Score = 38.3 bits (85), Expect = 0.026
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 289 AGSATLSMAYAGARLTASVLRGLKGESNVV 378
           AGSATLSMAYAGAR   S++  + G+  VV
Sbjct: 244 AGSATLSMAYAGARFVFSLVDAMNGKEGVV 273


>BC001917-1|AAH01917.1|  338|Homo sapiens malate dehydrogenase 2,
           NAD (mitochondrial) protein.
          Length = 338

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 34/84 (40%), Positives = 43/84 (51%)
 Frame = +3

Query: 3   IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
           I +EV K  G Y+PN+                 E  G+DP  V VPVIGGH+G TIIP++
Sbjct: 150 ITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLI 209

Query: 183 XQCQPAXKXSDPAKIKAXTERIQE 254
            QC P        ++ A T RIQE
Sbjct: 210 SQCTPKVDFPQD-QLTALTGRIQE 232



 Score = 38.3 bits (85), Expect = 0.026
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 289 AGSATLSMAYAGARLTASVLRGLKGESNVV 378
           AGSATLSMAYAGAR   S++  + G+  VV
Sbjct: 244 AGSATLSMAYAGARFVFSLVDAMNGKEGVV 273


>AF047470-1|AAC03787.1|  338|Homo sapiens malate dehydrogenase
           precursor protein.
          Length = 338

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 34/84 (40%), Positives = 43/84 (51%)
 Frame = +3

Query: 3   IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
           I +EV K  G Y+PN+                 E  G+DP  V VPVIGGH+G TIIP++
Sbjct: 150 ITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLI 209

Query: 183 XQCQPAXKXSDPAKIKAXTERIQE 254
            QC P        ++ A T RIQE
Sbjct: 210 SQCTPKVDFPQD-QLTALTGRIQE 232



 Score = 38.3 bits (85), Expect = 0.026
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 289 AGSATLSMAYAGARLTASVLRGLKGESNVV 378
           AGSATLSMAYAGAR   S++  + G+  VV
Sbjct: 244 AGSATLSMAYAGARFVFSLVDAMNGKEGVV 273


>AC005077-1|AAS07425.1|  316|Homo sapiens unknown protein.
          Length = 316

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 34/84 (40%), Positives = 43/84 (51%)
 Frame = +3

Query: 3   IASEVLK*AGXYDPNRXXXXXXXXXXXXXXXXXEXXGVDPTSVAVPVIGGHSGITIIPIL 182
           I +EV K  G Y+PN+                 E  G+DP  V VPVIGGH+G TIIP++
Sbjct: 128 ITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLI 187

Query: 183 XQCQPAXKXSDPAKIKAXTERIQE 254
            QC P        ++ A T RIQE
Sbjct: 188 SQCTPKVDFPQD-QLTALTGRIQE 210



 Score = 38.3 bits (85), Expect = 0.026
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 289 AGSATLSMAYAGARLTASVLRGLKGESNVV 378
           AGSATLSMAYAGAR   S++  + G+  VV
Sbjct: 222 AGSATLSMAYAGARFVFSLVDAMNGKEGVV 251


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,062,380
Number of Sequences: 237096
Number of extensions: 1190331
Number of successful extensions: 2263
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2257
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)