Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1535
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...   160   1e-40
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    40   4e-04
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    31   0.097
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    30   0.22 
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    27   2.1  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   2.7  
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch...    25   6.3  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   8.4  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score =  160 bits (389), Expect = 1e-40
 Identities = 88/179 (49%), Positives = 117/179 (65%), Gaps = 4/179 (2%)
 Frame = +3

Query: 72  SKGGLRTIAN-EENEERFGYVFAVSGPXVTAEKMSGSAMYELVRVGYNELVGEIIRLEGD 248
           +K  +R++ N +E+E R+G +F+VSGP V A  M G +MYELVRVG+ ELVGE+IR+  D
Sbjct: 8   AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQD 67

Query: 249 MAPSRYTEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINXLTQVHLHPQ 428
               +  EETSG+TVGDPV RTGKPLSVELGPG+  +I+DGIQRPLK I   +Q    P+
Sbjct: 68  KCTIQVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPR 127

Query: 429 GYXRAFPXXXXXXXI*PIKC*GRVPHH--GGDLYGIGHENTLVK-HRMLVPPKAXGTVT 596
           G               P K   R+  H  GGD++G   EN+L   H++++PP+A GTVT
Sbjct: 128 GINTESLNREHKWDFTPNKD-LRIGDHVSGGDVFGSVFENSLFNDHKIMLPPRARGTVT 185


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 276 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINXLTQVHLHP 425
           T G+  G  V+ TG P+S+ +GPG LG I + I  P+ +   +  V   P
Sbjct: 113 TEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSP 162


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 373 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSSVY 263
           IPS + P    P  T  GFP R    PT+ P+   VY
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPDSIKVY 404


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 239 KTDNLTDEFIVTDTDQLVHSRSGHLFGSDXGSRYGEDISEPLLILLIGDRP 87
           +T +L  E    DTD+ VHS+S    GS+  S    D  E  +I ++G  P
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 162 EKMSGSAMYELVRVGYNELVGEIIRLEGDMAPSRYTEETSGVTVGDPVLRTGKPLSVEL 338
           E  + S +Y    V  ++    +I ++ D+   RY EET G     PV   GK L + L
Sbjct: 220 ETFAKSDLYIKRVVSASQKFSYVICIDEDLNDGRYHEETVGKPTSAPVF--GKKLEISL 276


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 181 ADPDIFSAVTXGPDTAKTYPN 119
           AD  +F AV   PDTAK YPN
Sbjct: 33  ADAVVFKAVGVAPDTAK-YPN 52


>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
           Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 169 CPDLLCTSWSVSVTMNSS-VRLSVLKVTWPHPGIPKKLQV 285
           C D+L   WS   TM S+ + L  L  T P P  P+  QV
Sbjct: 89  CLDILKDQWSPVYTMKSALISLQSLLCT-PEPSNPQDAQV 127


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 172 DIFSAVTXGPDTAKTYPNLSSFSSLAIVLK 83
           D    +  GP   +T+PN+ S +SLA+  K
Sbjct: 244 DTHLPIKMGPLDVQTHPNIRSIASLALSRK 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,758
Number of Sequences: 5004
Number of extensions: 52484
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)